View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_low_4 (Length: 692)
Name: NF2736_low_4
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 624; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 10 - 673
Target Start/End: Original strand, 45870105 - 45870771
Alignment:
| Q |
10 |
aagaatatgtaactcttatgaagagcacgtgagcttgtatataattttcatcaagccagttggactggtcttatcactcatgcttgctgtacctgtaatt |
109 |
Q |
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| T |
45870105 |
aagaatatgtaactcttatgaagagcacgtgagcttgtatataattttcatcaagccagttggactggtcttatcactcatgcttgctgtacctgtaatt |
45870204 |
T |
|
| Q |
110 |
gtttattggtagtttattagttggaattttcctctcttgtactgaaattaatggatttaaattattcggagatacgtgaaaaatctcgtagtctttctca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
45870205 |
gtttattggtagtttattagttggaattttcctctcttgtactgaaattaatggatttaaattattcggagatacctgaagaatctcgtagtctttctca |
45870304 |
T |
|
| Q |
210 |
atttggttgtgcaaaggcagaagctagaagtttgtaagtgataggtaccaaagtgaagtgcctgacaagttatagggagatacttgtgtttctttaatta |
309 |
Q |
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| T |
45870305 |
atttggttgtgcaaaggcagaagctagaagtttgtaagtgataggtaccaaagtgaagtgcctgacaagttatagggagatacttgtgtttctttaatta |
45870404 |
T |
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| Q |
310 |
ttaatttgaattaattgttagctgagtttactaggttgtagtaaagccctatattgtgataaaactatttttgcattgctaacattttgacgagatttct |
409 |
Q |
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| T |
45870405 |
ttaatttgaattaattgttagctgagtttactaggttgtagtaaagccctatattgtgataaaactatttttgcattgctaacattttgacgagatttct |
45870504 |
T |
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| Q |
410 |
ttttactg--cacaaaaggtgaatatgtaaaaggaaagtagaagggaaatataagcacatgttaaggtataaatgtttgcttg-ttttttattgattatt |
506 |
Q |
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| T |
45870505 |
ttttactgcacacaaaaggtgaatatgtaaagggaaagtagaagggaaatataagcacatgttaaggtataaatgtttacttgtttttttattgtttatt |
45870604 |
T |
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| Q |
507 |
gattcgttgatgttcaaaaataattttactggtgtttttgtgagtcatacagggttatggtatttcaaatgtatagtacttggttgttcctttagaaggt |
606 |
Q |
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| T |
45870605 |
gattcgttgatgttcaaaaataattttactggtgtttttgtgagtcatacagggttatggtatttcaaatgtacagtacttggttgttcctttagaaggt |
45870704 |
T |
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| Q |
607 |
aaaggttcacttggtccaacatcttatgtcatttgaagtttatgttacttatttgcggccttttaaa |
673 |
Q |
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| T |
45870705 |
aaaggttcacttggtccaacatcttatgtcatttgaagtttatgttacttatttgcggccttttaaa |
45870771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 45857552 - 45857781
Alignment:
| Q |
10 |
aagaatatgtaactcttatgaagagcacgtgagcttgtatataattttcatcaagccagttggactggtcttatcactcatgcttgctgtacctgtaatt |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
45857552 |
aagaatttgtaactcttatgaagagcacgtgagcttgtatatatttttcatcaacccagttggactagtcttatcactcatgcttgttgtacctgtaatt |
45857651 |
T |
|
| Q |
110 |
gtttattggtagtttattagttggaattttcctctcttgtactgaaattaatggatttaaattattcggagatacgtgaaaaatctcgtagtctttctca |
209 |
Q |
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||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| |
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| T |
45857652 |
gtttattggtagtctattacttggaattttcctctc--gtactgaaattaatggatttaaattattcggagatacctgaagaatctcgttgtctttctca |
45857749 |
T |
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| Q |
210 |
atttggttgtgcaaaggcagaagctagaagtt |
241 |
Q |
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| T |
45857750 |
atttggttgtccaaagacagaagctagaagtt |
45857781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 336 - 446
Target Start/End: Complemental strand, 45962469 - 45962357
Alignment:
| Q |
336 |
tttactaggttgtagtaaagccctatattgtgataaaactatttttgcattgctaacattttgacgagatttctttttactgcacaaaaggtg--aatat |
433 |
Q |
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|||||||||||| |||||||||| ||||| ||||| |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||| ||| ||||| |
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| T |
45962469 |
tttactaggttggggtaaagccctggattgtaataaagctattttttcattcttaaaattttgacgagatatctgtttactgcccaaaatgtgaaaatat |
45962370 |
T |
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| Q |
434 |
gtaaaaggaaagt |
446 |
Q |
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||||| ||||||| |
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| T |
45962369 |
gtaaagggaaagt |
45962357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 348
Target Start/End: Complemental strand, 45980573 - 45980448
Alignment:
| Q |
223 |
aaggcagaagctagaagtttgtaagtgataggtaccaaagtgaagtgcctgacaagttatagggagatacttgtgtttctttaattattaa-tttgaatt |
321 |
Q |
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||||||||||||||| |||||||||||| |||||||||||| || | | | ||| || |||||||||||| || || |||| ||||||| ||| | || |
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| T |
45980573 |
aaggcagaagctagaggtttgtaagtgacaggtaccaaagtaaaatacattacaggtcgcagggagatacttctgctt-tttatttattaactttaattt |
45980475 |
T |
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| Q |
322 |
aattgttagctgagtttactaggttgt |
348 |
Q |
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||||||||||||||||| |||||||| |
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| T |
45980474 |
cattgttagctgagtttattaggttgt |
45980448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 45980741 - 45980689
Alignment:
| Q |
10 |
aagaatatgtaactcttatgaagagcacgtgagcttgtatataattttcatca |
62 |
Q |
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|||||| |||||||||||||||||| || |||||||||||||| ||||||||| |
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| T |
45980741 |
aagaatttgtaactcttatgaagagtacttgagcttgtatatatttttcatca |
45980689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 45980662 - 45980597
Alignment:
| Q |
109 |
tgtttattggtagtttattagttggaattttcctctcttgtactgaaattaatggatttaaattattc |
176 |
Q |
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|||||||| ||||| |||||||| |||||| | |||| || ||||||||| |||||||||||||||| |
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| T |
45980662 |
tgtttattcgtagtctattagttagaatttccttctcatg--ctgaaattagtggatttaaattattc |
45980597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 522 - 672
Target Start/End: Original strand, 40893530 - 40893680
Alignment:
| Q |
522 |
aaaaataattttactggtgtttttgtgagtcatacagggttatggtatttcaaatgtatagtacttggttgtt-cctttagaaggtaaaggttcacttgg |
620 |
Q |
| |
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|||| ||| |||||||||||||||| ||||||||||||||| || |||||||||| ||||| || ||| || ||||||||| |||||||||||||||| |
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| T |
40893530 |
aaaattaactttactggtgtttttgcaagtcatacagggttacggg-tttcaaatgt-tagtatttagtttttgcctttagaaagtaaaggttcacttgg |
40893627 |
T |
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| Q |
621 |
tccaacatcttatgtcatttgaagtt-tatgttacttatttgcggccttttaa |
672 |
Q |
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| T |
40893628 |
tcaaacatcttatgtcatttgaagttagatgttacttatttgtggccttttaa |
40893680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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