View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2736_low_42 (Length: 257)
Name: NF2736_low_42
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_42 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 54562242 - 54562481
Alignment:
| Q |
18 |
gcaacaaaacgttgattaagtttcacggacaagttacgaagcaaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaa |
117 |
Q |
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| T |
54562242 |
gcaacaaaacgttgattaagtttcacggacaagttacgaagcaaatagaaaatggcatcaacagtagaatcggtttgcatagctgcatgttggacatcaa |
54562341 |
T |
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| Q |
118 |
accacatcccagctgacttccaaacatgaattgcaaaaggacattcaaagaaaatgtggttcagatcctcataattagaattgcaactagcacacatcgt |
217 |
Q |
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| T |
54562342 |
accacatccaagctgacttccaaacatgaattgcaaaaggacattcaaagaaaatgtggttcagatcctcataattagaattgcaactagcacacatcgt |
54562441 |
T |
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| Q |
218 |
cggacacgacacacccttgtcttgcggtcggatgcaggtt |
257 |
Q |
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| T |
54562442 |
cggacacgacacacccttgtcttgcaatctgatgcaggtt |
54562481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 46988591 - 46988654
Alignment:
| Q |
59 |
caaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaaaccacat |
124 |
Q |
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| T |
46988591 |
caaataaaaaatggcctcaa--gtaaaatcagtttgcatagctgcatgttggacatcaaaccacat |
46988654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 22786781 - 22787001
Alignment:
| Q |
22 |
caaaacgttgattaagtttcacggacaagttacgaagcaaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaaacca |
121 |
Q |
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| T |
22786781 |
caaaacgttgattaagttgcacatacaagttgcgaagcaaataaaaaatggcctcaacggcataatcagtttgcatagctgcatgttggacatcaaacta |
22786880 |
T |
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| Q |
122 |
catcccagctgacttccaaacatgaattgcaaaaggacattcaaagaaaatgtggttcagatcctcataattagaattgcaactagcacacatcgtcgga |
221 |
Q |
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| T |
22786881 |
catcccagatgagttccacacctgaattgcaaaagggcattcaaagaaaatgtggttcatgtcctcatgattagaattgcagctagcacacaccgtcaga |
22786980 |
T |
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| Q |
222 |
cacgacacacccttgtcttgc |
242 |
Q |
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| T |
22786981 |
cacgacacacctttgtcttgc |
22787001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 38950307 - 38950195
Alignment:
| Q |
22 |
caaaacgttgattaagtttcacggacaagttacgaagcaaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaaacca |
121 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38950307 |
caaaatgttgattaagtttcacggacaagttacgaagcaaatagaaaatggcctcaacagtagaatccgtttgcatagctgcatgttggacatcaaacca |
38950208 |
T |
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| Q |
122 |
catcccagctgac |
134 |
Q |
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| T |
38950207 |
catcccagctgac |
38950195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 18610467 - 18610360
Alignment:
| Q |
135 |
ttccaaacatgaattgcaaaaggacattcaaagaaaatgtggttcagatcctcataattagaattgcaactagcacacatcgtcggacacgacacaccct |
234 |
Q |
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||||| || |||||||||||||| ||||| |||||||||||||||| ||||||| |||||||||||| | | | |||| ||||||||||||||||| | |
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| T |
18610467 |
ttccacacctgaattgcaaaagggcattcgaagaaaatgtggttcaagtcctcatgattagaattgcagccaacgcacactgtcggacacgacacacctt |
18610368 |
T |
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| Q |
235 |
tgtcttgc |
242 |
Q |
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|||||||| |
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| T |
18610367 |
tgtcttgc |
18610360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 38950196 - 38950167
Alignment:
| Q |
209 |
acacatcgtcggacacgacacacccttgtc |
238 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
38950196 |
acacatcgtcggacacgacacacccttgtc |
38950167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 17178240 - 17178133
Alignment:
| Q |
59 |
caaatagaaaatggcctcaacagtagaatcggtttgcatagctgcatgttggacatcaaaccacatcccagctgacttccaaacatgaattgcaaaagga |
158 |
Q |
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| T |
17178240 |
caaatagaaaatggtattaacagctgaatccgattgcatagcagcatgctgaacatcataccacattccggctgaattccaaacttgaatagcaaaagga |
17178141 |
T |
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| Q |
159 |
cattcaaa |
166 |
Q |
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| T |
17178140 |
cattcaaa |
17178133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 27010480 - 27010554
Alignment:
| Q |
92 |
ttgcatagctgcatgttggacatcaaaccacatcccagctgacttccaaacatgaattgcaaaaggacattcaaa |
166 |
Q |
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| T |
27010480 |
ttgcatagcagcatgttcaacatcataccacattccagctgaattccaaacttgaatagcaaaaggacattcaaa |
27010554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 5380155 - 5380101
Alignment:
| Q |
118 |
accacatcccagctgacttccaaacatgaattgcaaaaggacattcaaagaaaat |
172 |
Q |
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| T |
5380155 |
accatatcccagctgagatccaaacatgtatagcaaaagaacattcaaagaaaat |
5380101 |
T |
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