View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2736_low_46 (Length: 246)

Name: NF2736_low_46
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2736_low_46
NF2736_low_46
[»] chr7 (10 HSPs)
chr7 (1-138)||(48236175-48236312)
chr7 (15-138)||(14124207-14124333)
chr7 (15-138)||(14427603-14427729)
chr7 (68-126)||(4428102-4428160)
chr7 (20-128)||(2264499-2264607)
chr7 (45-124)||(12173335-12173414)
chr7 (10-124)||(332721-332835)
chr7 (1-138)||(9708808-9708934)
chr7 (69-124)||(13136988-13137043)
chr7 (76-137)||(13031148-13031210)
[»] chr1 (4 HSPs)
chr1 (1-138)||(29216723-29216861)
chr1 (15-138)||(22463695-22463819)
chr1 (16-137)||(36135109-36135230)
chr1 (69-124)||(21134093-21134148)
[»] chr6 (5 HSPs)
chr6 (1-138)||(22803165-22803304)
chr6 (10-124)||(21626127-21626241)
chr6 (15-127)||(16878338-16878450)
chr6 (10-124)||(13603203-13603317)
chr6 (69-136)||(20111775-20111843)
[»] chr3 (6 HSPs)
chr3 (15-124)||(18140542-18140651)
chr3 (15-124)||(25766466-25766575)
chr3 (18-124)||(22141853-22141959)
chr3 (69-124)||(30053270-30053325)
chr3 (69-137)||(12962184-12962253)
chr3 (69-136)||(16657700-16657768)
[»] scaffold0607 (1 HSPs)
scaffold0607 (21-124)||(7917-8020)
[»] chr8 (6 HSPs)
chr8 (30-124)||(22664185-22664279)
chr8 (18-138)||(15335021-15335144)
chr8 (18-138)||(15424084-15424207)
chr8 (18-138)||(15515390-15515513)
chr8 (15-126)||(3597299-3597409)
chr8 (10-124)||(19928098-19928212)
[»] chr2 (1 HSPs)
chr2 (1-138)||(28710763-28710903)
[»] scaffold0414 (1 HSPs)
scaffold0414 (21-124)||(6084-6187)
[»] scaffold0007 (1 HSPs)
scaffold0007 (15-137)||(144106-144230)
[»] scaffold0227 (1 HSPs)
scaffold0227 (18-136)||(25019-25135)
[»] scaffold0176 (1 HSPs)
scaffold0176 (21-126)||(10260-10365)
[»] scaffold0028 (1 HSPs)
scaffold0028 (15-124)||(4570-4679)
[»] scaffold1948 (1 HSPs)
scaffold1948 (15-124)||(486-595)
[»] scaffold0249 (1 HSPs)
scaffold0249 (69-124)||(16745-16800)
[»] scaffold0015 (1 HSPs)
scaffold0015 (17-124)||(165234-165341)
[»] chr4 (1 HSPs)
chr4 (1-138)||(13575075-13575201)
[»] scaffold1260 (1 HSPs)
scaffold1260 (69-121)||(1788-1840)
[»] scaffold0011 (1 HSPs)
scaffold0011 (69-124)||(134375-134430)
[»] scaffold0435 (1 HSPs)
scaffold0435 (69-124)||(4328-4383)
[»] scaffold0056 (1 HSPs)
scaffold0056 (69-124)||(33818-33873)
[»] scaffold0066 (1 HSPs)
scaffold0066 (69-136)||(59920-59988)


Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 48236175 - 48236312
Alignment:
Q  1 aaagactggttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48236175 aaagactggttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatgatccaaaa 48236274  T
Q  101 acaagcccaaccctagttgcacacattagcttgtttag 138  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  48236275 acaagcccaaccctacttgcacacattagcttgtttag 48236312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 14124333 - 14124207
Alignment:
Q  15 agtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||| ||||||||    
T  14124333 agtaattaagagttcaagcaagagatgaacaaaaaggcagatgaaactcaaagaatgatgcaacaaatgatggagatgattcaaagacaagtccaaccct 14124234  T
Q  115 agttgcacaca---ttagcttgtttag 138  Q
    |||||||||||   |||||||||||||    
T  14124233 agttgcacacatatttagcttgtttag 14124207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 14427729 - 14427603
Alignment:
Q  15 agtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    |||||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||| ||||||||    
T  14427729 agtaattaagagttcaagcaagagatgaacaaaaaggcagatgaaactcaaagaatgatgcaacaaatgatggagatgattcaaagacaagtccaaccct 14427630  T
Q  115 agttgcacaca---ttagcttgtttag 138  Q
    |||||||||||   |||||||||||||    
T  14427629 agttgcacacatatttagcttgtttag 14427603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 4428102 - 4428160
Alignment:
Q  68 aatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacacat 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||    
T  4428102 aatgatgcaacaaatgatggagatgatccaaaaacaagcccaaccttagtagcacacat 4428160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 2264499 - 2264607
Alignment:
Q  20 tgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttg 119  Q
    |||||| |||||| | || ||||| ||||||||||||||||| || | |||||||||||  |||||||| || || |||| ||||||||||||| ||||     
T  2264499 tgaagaattcaagaaggaaatgaacagaaaggcagatgaaactcagaaaatgatgcaacggatgatggaaatgatacaaagacaagcccaacccaagtta 2264598  T
Q  120 cacacatta 128  Q
    |||||||||    
T  2264599 cacacatta 2264607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 12173335 - 12173414
Alignment:
Q  45 agaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacac 124  Q
    |||||||||||||||||  | |||||||||||||| ||||||||||| || |||| |||||| ||||| |||||||||||    
T  12173335 agaaaggcagatgaaactgagagaatgatgcaacagatgatggagatgattcaaagacaagcgcaaccttagttgcacac 12173414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 332835 - 332721
Alignment:
Q  10 ttaaaagtaatgaagagttcaagcaagagatgaa-tagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagccc 108  Q
    ||||||| ||||||||||| |||||||| |||||  || || ||||||||||| ||||  |||||| ||||||||||||||||  |||| ||||||||      
T  332835 ttaaaagcaatgaagagtttaagcaagaaatgaagcagcaa-gcagatgaaactcaaaagatgatgaaacaaatgatggagatgttccagaaacaagcta 332737  T
Q  109 aaccctagttgcacac 124  Q
    |||| |||||||||||    
T  332736 aaccttagttgcacac 332721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 9708808 - 9708934
Alignment:
Q  1 aaagactggttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaa 100  Q
    ||||| |||| || ||||||||||| ||||||||||| ||||||||||| | |||||||||| | ||||||            |||||||| ||||||||    
T  9708808 aaagattggtcaagagtaatgaagaattcaagcaagaaatgaatagaaaagtagatgaaacaaagagaatg------------atggagatgatccaaaa 9708895  T
Q  101 acaagcccaaccctagttgcaca-cattagcttgtttag 138  Q
    |||||||||||| || || |||| |||||||||||||||    
T  9708896 acaagcccaaccttaatttcacatcattagcttgtttag 9708934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 13136988 - 13137043
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacac 124  Q
    |||||| |||| |||||||||||  |||||| |||||||||||| |||||||||||    
T  13136988 atgatgaaacagatgatggagatgttccaaagacaagcccaaccttagttgcacac 13137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 13031148 - 13031210
Alignment:
Q  76 aacaaatgatggagatcatccaaaaacaagcccaaccctagttgcaca-cattagcttgttta 137  Q
    |||| |||||||| ||  ||||||||||||||||||| |||||||||| | ||||||||||||    
T  13031148 aacagatgatggaaatgttccaaaaacaagcccaaccttagttgcacacccttagcttgttta 13031210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 29216861 - 29216723
Alignment:
Q  1 aaagactggttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaa 100  Q
    ||||| |||| || ||||||||||| ||||||||| | ||||||| ||| |||||||||||||| ||| ||||| |||||||||||||||| ||||||||    
T  29216861 aaagattggtcaagagtaatgaagaattcaagcaacaaatgaataaaaaagcagatgaaacacagagagtgatgaaacaaatgatggagatgatccaaaa 29216762  T
Q  101 acaagcccaaccctagttgcaca-cattagcttgtttag 138  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  29216761 acaagcccaaccttagttgcacatcattagcttgtttag 29216723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 22463695 - 22463819
Alignment:
Q  15 agtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    ||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |    
T  22463695 agtaatgaagaattcaagcaagaaatgaatagaagagcagatgaaacacaaagaatgatgaaacaaatgatggagatgatccaaaaacaagcccaacctt 22463794  T
Q  115 agttgcaca-cattagcttgtttag 138  Q
    |||| || | ||||| |||||||||    
T  22463795 agtttcagaccattaacttgtttag 22463819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 36135230 - 36135109
Alignment:
Q  16 gtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaacccta 115  Q
    |||||||||| ||||||||||| || ||   | | |||||||||||||| ||||||||| ||| ||||||||||||  ||||||||||||| ||||  ||    
T  36135230 gtaatgaagatttcaagcaagaaataaagcaacaagcagatgaaacacagagaatgatgaaaccaatgatggagatgttccaaaaacaagctcaacatta 36135131  T
Q  116 gttgcacacattagcttgttta 137  Q
    |||||| || ||||||||||||    
T  36135130 gttgcataccttagcttgttta 36135109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 21134093 - 21134148
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacac 124  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||    
T  21134093 atgatgcaacaaatgatggagatgatccaaaaacaagcccaaccttagtagcacac 21134148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 22803304 - 22803165
Alignment:
Q  1 aaagactggttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaa-gaatgatgcaacaaatgatggagatcatccaaa 99  Q
    ||||| |||| || ||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| |||||||| |||||||||||||||| ||| |||    
T  22803304 aaagattggtcaagagtaatgaagaattcaagcaagaaatgaatagaaaagcagatgaaacaaaaaagaatgatgaaacaaatgatggagatgatcaaaa 22803205  T
Q  100 aacaagcccaaccctagttgcaca-cattagcttgtttag 138  Q
    ||||| ||||||| |||||||||| |||||||||||||||    
T  22803204 aacaaacccaaccttagttgcacatcattagcttgtttag 22803165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 21626241 - 21626127
Alignment:
Q  10 ttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagccca 109  Q
    |||| ||||||||||  ||||||||||| |||||   | | |||||||||||||| ||||||||| ||||||||||||||||  ||||||||||| ||||    
T  21626241 ttaagagtaatgaagtcttcaagcaagaaatgaagcaacaagcagatgaaacacagagaatgatgaaacaaatgatggagatgttccaaaaacaatccca 21626142  T
Q  110 accctagttgcacac 124  Q
    ||| |||||||||||    
T  21626141 accttagttgcacac 21626127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 16878450 - 16878338
Alignment:
Q  15 agtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    |||||||||||||| |  ||||| ||||| | ||||||||||||||| || |  ||||||||||| | ||||||||| || |||| |||| | |||||||    
T  16878450 agtaatgaagagtttagacaagaaatgaacataaaggcagatgaaactcagaagatgatgcaacagaggatggagatgattcaaagacaaactcaaccct 16878351  T
Q  115 agttgcacacatt 127  Q
    | |||||||||||    
T  16878350 aattgcacacatt 16878338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 13603317 - 13603203
Alignment:
Q  10 ttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagccca 109  Q
    ||||||| |||||||  ||||||||||| |||||   | | ||||| || ||| | || |||||| |||| |||||||||||  ||||||||||||| ||    
T  13603317 ttaaaagcaatgaagctttcaagcaagaaatgaagcaacaagcagaagagacaaacaggatgatgaaacagatgatggagatgttccaaaaacaagctca 13603218  T
Q  110 accctagttgcacac 124  Q
    ||| |||||||||||    
T  13603217 accttagttgcacac 13603203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 20111775 - 20111843
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcaca-cattagcttgttt 136  Q
    |||||| |||| |||||||| ||  |||| |||||||||||||| |||||||||| | |||||||||||    
T  20111775 atgatgaaacagatgatggaaatattccagaaacaagcccaaccttagttgcacacccttagcttgttt 20111843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 18140542 - 18140651
Alignment:
Q  15 agtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    ||||||||||| ||||||||||| ||||||  ||| |||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||| |    
T  18140542 agtaatgaagacttcaagcaagaaatgaatgaaaaagcagatgaaacacagagaatgatgaaacaaatgatggagatgatctaaaaacaagcccaacctt 18140641  T
Q  115 agttgcacac 124  Q
    ||||||||||    
T  18140642 agttgcacac 18140651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 25766575 - 25766466
Alignment:
Q  15 agtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    ||||||||| |||| |||||||| ||||||||||||||| ||||||| || |||||||||||||| ||||||||||| || |||| |||||||||||| |    
T  25766575 agtaatgaatagtttaagcaagaaatgaatagaaaggcatatgaaactcagagaatgatgcaacagatgatggagatgattcaaagacaagcccaacctt 25766476  T
Q  115 agttgcacac 124  Q
    ||||||||||    
T  25766475 agttgcacac 25766466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 22141959 - 22141853
Alignment:
Q  18 aatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagt 117  Q
    |||||||||||||||||||| || || ||||| ||||||||||| ||||| ||||||||||| ||||||||  | || |||||||||| |||||| ||||    
T  22141959 aatgaagagttcaagcaagaaattaacagaaaagcagatgaaactcaaaggatgatgcaacagatgatggaactgattcaaaaacaagtccaaccttagt 22141860  T
Q  118 tgcacac 124  Q
    |||||||    
T  22141859 tgcacac 22141853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 30053270 - 30053325
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacac 124  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||    
T  30053270 atgatgcaacaaatgatggagatgatccaaaaacaagcccaaccttagctgcacac 30053325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 12962184 - 12962253
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcaca-cattagcttgttta 137  Q
    |||||| ||||||||||| ||||  || |||||||||||||||| |||||||||| | ||||||||||||    
T  12962184 atgatgaaacaaatgatgaagatgttcgaaaaacaagcccaaccttagttgcacacccttagcttgttta 12962253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 16657700 - 16657768
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcaca-cattagcttgttt 136  Q
    |||||| |||| |||||||||||  ||||||||||||||||||| || ||||||| | |||||||||||    
T  16657700 atgatgaaacagatgatggagatgttccaaaaacaagcccaaccttaattgcacacccttagcttgttt 16657768  T

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Target: scaffold0607 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 8020 - 7917
Alignment:
Q  21 gaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgc 120  Q
    ||||| ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| || |||||||| || |||||||||| |||||| |||||||    
T  8020 gaagaattcaagcaagagatgaacagaaaggcatatgaaacccaaagaatgatgcaacacattatggagatgattcaaaaacaagtccaaccttagttgc 7921  T
Q  121 acac 124  Q
    ||||    
T  7920 acac 7917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 22664279 - 22664185
Alignment:
Q  30 aagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacac 124  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||| || ||||||||||| ||||| |||||||||||    
T  22664279 aagcaagagatgaacagaaaggcagatgaaacccaaagaatgatgcaatatatgatggagatgattcaaaaacaagctcaaccttagttgcacac 22664185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 15335021 - 15335144
Alignment:
Q  18 aatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagt 117  Q
    |||||||||||||||||||| ||||| |  |||||||||||||| ||||  ||||||||||| ||||||||||| || |||| |||||||||||||||||    
T  15335021 aatgaagagttcaagcaagaaatgaacaagaaggcagatgaaactcaaaagatgatgcaacagatgatggagatgattcaaagacaagcccaaccctagt 15335120  T
Q  118 tgcacaca---ttagcttgtttag 138  Q
     |||||||   |||||||||||||    
T  15335121 ggcacacatatttagcttgtttag 15335144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 15424084 - 15424207
Alignment:
Q  18 aatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagt 117  Q
    |||||||||||||||||||| ||||| |  |||||||||||||| ||||  ||||||||||| ||||||||||| || |||| |||||||||||||||||    
T  15424084 aatgaagagttcaagcaagaaatgaacaagaaggcagatgaaactcaaaagatgatgcaacagatgatggagatgattcaaagacaagcccaaccctagt 15424183  T
Q  118 tgcacaca---ttagcttgtttag 138  Q
     |||||||   |||||||||||||    
T  15424184 ggcacacatatttagcttgtttag 15424207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 15515390 - 15515513
Alignment:
Q  18 aatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagt 117  Q
    |||||||||||||||||||| ||||| |  |||||||||||||| ||||  ||||||||||| ||||||||||| || |||| |||||||||||||||||    
T  15515390 aatgaagagttcaagcaagaaatgaacaagaaggcagatgaaactcaaaagatgatgcaacagatgatggagatgattcaaagacaagcccaaccctagt 15515489  T
Q  118 tgcacaca---ttagcttgtttag 138  Q
     |||||||   |||||||||||||    
T  15515490 ggcacacatatttagcttgtttag 15515513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 3597299 - 3597409
Alignment:
Q  15 agtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||| || |||||||||||| | |||||||| || || |||| |||||  |||||||    
T  3597299 agtaatgaagagtttaagcaagaaatgaacagaaaggcagatgaaactcagagaatgatgcaatagatgatggaaatgattcaaagacaag-tcaaccct 3597397  T
Q  115 agttgcacacat 126  Q
    ||||||||||||    
T  3597398 agttgcacacat 3597409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 19928212 - 19928098
Alignment:
Q  10 ttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagccca 109  Q
    |||| |||||||||||||| | |||||| ||||| ||||||| ||||||||| || |||||||||||||| |||||| | || || |||| |||| ||||    
T  19928212 ttaagagtaatgaagagtttaggcaagaaatgaacagaaaggtagatgaaactcagagaatgatgcaacagatgatgaatatgattcaaagacaatccca 19928113  T
Q  110 accctagttgcacac 124  Q
    ||| |||||||||||    
T  19928112 accttagttgcacac 19928098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 28710763 - 28710903
Alignment:
Q  1 aaagactggttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaa 100  Q
    ||||| |||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| || |  ||||||||| |||||||| |||| || ||||     
T  28710763 aaagattggtcaagagtaatgaagagttcaaacaagagatgaacagaaaggcagatgaaactcataagatgatgcaagaaatgatgaagatgattcaaag 28710862  T
Q  101 acaagcccaaccctagttgcacaca---ttagcttgtttag 138  Q
    | |||||||||||||||| ||||||   |||||||||||||    
T  28710863 ataagcccaaccctagtttcacacatatttagcttgtttag 28710903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 6084 - 6187
Alignment:
Q  21 gaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgc 120  Q
    ||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||| | |||||||| || || |||| |||||||||||| |||||||    
T  6084 gaagaatttaagcaagagatgaacagaaaggcagatgaaactcaaagaatgatgcaaaatatgatggaaatgattcaaagacaagcccaaccttagttgc 6183  T
Q  121 acac 124  Q
    ||||    
T  6184 acac 6187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 144230 - 144106
Alignment:
Q  15 agtaatgaagagttcaagcaagaga-tgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccc 113  Q
    ||||||||||| ||||||||||| | ||||   ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| | || ||     
T  144230 agtaatgaagatttcaagcaagaaaatgaagcaaaaagcagatgaaacacatagaatgatgcaacaaatgatggagatgatccaaaaacaaacacagcct 144131  T
Q  114 tagttgcaca-cattagcttgttta 137  Q
    |||||||||| | ||||||||||||    
T  144130 tagttgcacacccttagcttgttta 144106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 25135 - 25019
Alignment:
Q  18 aatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagt 117  Q
    |||||||| ||||||||| | ||||||  ||| ||||||||||||   ||||||||| |||||||||| ||||| ||||||||||||| |||||| ||||    
T  25135 aatgaagaattcaagcaacaaatgaatcaaaaagcagatgaaaca---agaatgatgaaacaaatgatagagatgatccaaaaacaaggccaaccttagt 25039  T
Q  118 tgcaca-cattagcttgttt 136  Q
    |||||| || ||||||||||    
T  25038 tgcacatcaatagcttgttt 25019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 126
Target Start/End: Complemental strand, 10365 - 10260
Alignment:
Q  21 gaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgc 120  Q
    ||||| || |||||||| ||||| | ||||||||||||||| ||||||||||||||||| |||||| | || || |||| |||||||||||  |||||||    
T  10365 gaagaatttaagcaagaaatgaacaaaaaggcagatgaaactcaaagaatgatgcaacatatgatgaaaatgattcaaagacaagcccaactttagttgc 10266  T
Q  121 acacat 126  Q
    ||||||    
T  10265 acacat 10260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 4570 - 4679
Alignment:
Q  15 agtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    ||||||||||| || |||||||| ||||| |||||||||||||||||  | |||||||||||||| |||||| | || || |||| ||||||| |||| |    
T  4570 agtaatgaagaatttaagcaagaaatgaacagaaaggcagatgaaacttagagaatgatgcaacagatgatgaatatgattcaaagacaagcctaacctt 4669  T
Q  115 agttgcacac 124  Q
    ||||||||||    
T  4670 agttgcacac 4679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1948 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1948
Description:

Target: scaffold1948; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 595 - 486
Alignment:
Q  15 agtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    ||||||||||| || |||||||| ||||| ||||||| ||||||||| ||||||||| |||| || |||||| | || || |||| ||||||| |||| |    
T  595 agtaatgaagaatttaagcaagaaatgaacagaaaggtagatgaaactcaaagaatggtgcagcagatgatgaatatgattcaaagacaagcctaacctt 496  T
Q  115 agttgcacac 124  Q
    ||||||||||    
T  495 agttgcacac 486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 16745 - 16800
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacac 124  Q
    ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||    
T  16745 atgatgcaacaaatgatggagatgatccaaaaacaagctcaaccttagttgcacac 16800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 165234 - 165341
Alignment:
Q  17 taatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaa--tgatgcaacaaatgatggagatcatccaaaaacaagcccaaccct 114  Q
    ||||||||||||||  ||||| ||||||||| ||||||| || ||| | ||||  ||||||||||| |||||||| | || ||||||||||||||||| |    
T  165234 taatgaagagttcatacaagacatgaatagacaggcaga-gagaca-agagaagatgatgcaacaattgatggagttgatgcaaaaacaagcccaacctt 165331  T
Q  115 agttgcacac 124  Q
    ||||||||||    
T  165332 agttgcacac 165341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 13575075 - 13575201
Alignment:
Q  1 aaagactggttaaaagtaatgaagagttcaagcaagagatgaatagaaaggcagatgaaacacaaagaatgatgcaacaaatgatggagatcatccaaaa 100  Q
    ||||| |||| || ||||||||||| ||||||||||| ||||||||||| | |||||||||| | ||||||            |||||||| ||||||||    
T  13575075 aaagattggtcaagagtaatgaagaattcaagcaagaaatgaatagaaaagtagatgaaacaaagagaatg------------atggagatgatccaaaa 13575162  T
Q  101 acaagcccaaccctagttgcaca-cattagcttgtttag 138  Q
    |||||||||||| || || |||| |||||||||||||||    
T  13575163 acaagcccaaccttaatttcacatcattagcttgtttag 13575201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1260 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1260
Description:

Target: scaffold1260; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 1788 - 1840
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgca 121  Q
    ||||||||||||||||||||||| || |||| |||||||||||| ||||||||    
T  1788 atgatgcaacaaatgatggagatgattcaaagacaagcccaaccttagttgca 1840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 134375 - 134430
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacac 124  Q
    ||||||||||||||||||||||| || |||| | |||||||||| |||||||||||    
T  134375 atgatgcaacaaatgatggagatgattcaaagagaagcccaaccttagttgcacac 134430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0435 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0435
Description:

Target: scaffold0435; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 4328 - 4383
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacac 124  Q
    |||||| |||| |||||||||||  |||||| |||||||||||| |||||||||||    
T  4328 atgatgaaacagatgatggagatgttccaaagacaagcccaaccttagttgcacac 4383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 33818 - 33873
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcacac 124  Q
    |||||||||||||||||| || | || ||||||||||||||||| | |||||||||    
T  33818 atgatgcaacaaatgatgaagttgattcaaaaacaagcccaacctttgttgcacac 33873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 59920 - 59988
Alignment:
Q  69 atgatgcaacaaatgatggagatcatccaaaaacaagcccaaccctagttgcaca-cattagcttgttt 136  Q
    |||||| |||| |||||||||||  || | |||||||||||||| |||||||||| | |||||||||||    
T  59920 atgatgaaacagatgatggagatgttctagaaacaagcccaaccttagttgcacacccttagcttgttt 59988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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