View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2736_low_47 (Length: 244)
Name: NF2736_low_47
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2736_low_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 75 - 211
Target Start/End: Original strand, 30497123 - 30497254
Alignment:
| Q |
75 |
agtttcttagaggtgttaaaatagatagatggattggataaaatcattttgatccctcacaaaaaatatgtaactagatttatccatgagaaaagcacaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
30497123 |
agtttcttagaggtgttaaaatagatagat----tggataaaatcattttgatccctcacaaaaaatatgta-ctagatttatcaatgagaaaagcacaa |
30497217 |
T |
|
| Q |
175 |
catttcaatcattctgtcaatatttttttacaatcga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30497218 |
catttcaatcattctgtcaatatttttttacaatcga |
30497254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30497015 - 30497090
Alignment:
| Q |
1 |
tgacctaatagg-acagctaataacagactgttgcatgcagtttgattttttaaatataggtttcattcaatctaa |
75 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30497015 |
tgacctaatagggacagctaataacagactgttgcatgcagtttgattttttcaatataggtttcattcaatctaa |
30497090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University