View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2736_low_52 (Length: 224)

Name: NF2736_low_52
Description: NF2736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2736_low_52
NF2736_low_52
[»] chr5 (27 HSPs)
chr5 (1-111)||(34278708-34278818)
chr5 (10-112)||(41625283-41625385)
chr5 (2-111)||(26440594-26440703)
chr5 (9-80)||(6500182-6500253)
chr5 (10-111)||(6175074-6175174)
chr5 (3-66)||(35641829-35641892)
chr5 (1-55)||(21031706-21031760)
chr5 (1-57)||(2551566-2551622)
chr5 (1-57)||(5985008-5985064)
chr5 (11-66)||(13985728-13985783)
chr5 (1-39)||(27674633-27674671)
chr5 (8-66)||(28142988-28143046)
chr5 (1-66)||(1098235-1098300)
chr5 (1-66)||(1830791-1830856)
chr5 (1-54)||(6734853-6734906)
chr5 (1-66)||(13548273-13548338)
chr5 (1-66)||(20022920-20022985)
chr5 (1-66)||(20040354-20040419)
chr5 (11-92)||(21743923-21744004)
chr5 (1-66)||(30211680-30211745)
chr5 (1-66)||(41263068-41263133)
chr5 (1-57)||(2864090-2864146)
chr5 (1-57)||(9936827-9936883)
chr5 (1-57)||(19344638-19344694)
chr5 (1-57)||(40316258-40316314)
chr5 (1-57)||(40316887-40316943)
chr5 (1-57)||(41410598-41410654)
[»] chr6 (23 HSPs)
chr6 (1-109)||(26210764-26210872)
chr6 (1-111)||(26240770-26240879)
chr6 (1-43)||(7632291-7632333)
chr6 (1-66)||(995623-995688)
chr6 (1-66)||(2656613-2656678)
chr6 (1-57)||(10105880-10105936)
chr6 (3-66)||(16661547-16661610)
chr6 (2-57)||(24693207-24693262)
chr6 (45-111)||(7631956-7632022)
chr6 (7-57)||(24718137-24718187)
chr6 (1-66)||(2397830-2397895)
chr6 (1-66)||(2667268-2667333)
chr6 (1-66)||(4890069-4890134)
chr6 (20-57)||(11973417-11973454)
chr6 (1-66)||(24798489-24798554)
chr6 (1-66)||(24825225-24825290)
chr6 (1-66)||(30699321-30699386)
chr6 (1-66)||(32541420-32541485)
chr6 (1-66)||(33121678-33121743)
chr6 (1-57)||(2141637-2141693)
chr6 (1-57)||(6142450-6142506)
chr6 (1-57)||(19788647-19788703)
chr6 (1-57)||(29514969-29515025)
[»] chr3 (27 HSPs)
chr3 (3-109)||(40414939-40415045)
chr3 (10-55)||(4016514-4016559)
chr3 (11-111)||(22755515-22755615)
chr3 (1-57)||(48690189-48690245)
chr3 (1-66)||(28958933-28958998)
chr3 (1-57)||(29720464-29720520)
chr3 (1-57)||(46866412-46866468)
chr3 (10-65)||(18971494-18971549)
chr3 (2-57)||(47340019-47340074)
chr3 (2-57)||(53274930-53274985)
chr3 (3-57)||(28562203-28562257)
chr3 (1-66)||(9484656-9484721)
chr3 (1-66)||(12948100-12948165)
chr3 (10-55)||(23369174-23369219)
chr3 (1-66)||(29455642-29455707)
chr3 (1-66)||(29793312-29793377)
chr3 (1-66)||(34263638-34263703)
chr3 (1-66)||(34555211-34555276)
chr3 (1-66)||(42098561-42098626)
chr3 (1-66)||(48927736-48927801)
chr3 (1-66)||(49076360-49076425)
chr3 (1-57)||(901022-901078)
chr3 (2-66)||(3086278-3086342)
chr3 (2-54)||(28389210-28389262)
chr3 (1-57)||(34669677-34669733)
chr3 (1-57)||(36179070-36179126)
chr3 (1-57)||(52094028-52094084)
[»] chr2 (21 HSPs)
chr2 (2-57)||(14802910-14802965)
chr2 (1-79)||(33740611-33740689)
chr2 (1-111)||(45001822-45001932)
chr2 (1-67)||(24853308-24853374)
chr2 (2-65)||(25765691-25765754)
chr2 (1-110)||(31975471-31975580)
chr2 (1-55)||(36931683-36931737)
chr2 (1-57)||(5096317-5096373)
chr2 (2-66)||(12209049-12209113)
chr2 (10-54)||(15300314-15300358)
chr2 (1-54)||(7442963-7443016)
chr2 (1-66)||(7724549-7724614)
chr2 (1-66)||(8373494-8373559)
chr2 (1-66)||(38963855-38963920)
chr2 (1-66)||(41436892-41436957)
chr2 (17-57)||(3566223-3566263)
chr2 (1-57)||(4137478-4137534)
chr2 (1-57)||(10333516-10333572)
chr2 (1-57)||(11383983-11384039)
chr2 (1-57)||(30708864-30708920)
chr2 (1-57)||(45036432-45036488)
[»] chr1 (20 HSPs)
chr1 (2-111)||(32834807-32834915)
chr1 (1-57)||(8980743-8980799)
chr1 (10-65)||(13971738-13971793)
chr1 (10-58)||(43891470-43891518)
chr1 (10-58)||(40711048-40711098)
chr1 (1-57)||(3277622-3277678)
chr1 (7-57)||(1191199-1191249)
chr1 (1-66)||(3529312-3529377)
chr1 (1-66)||(6017392-6017457)
chr1 (1-66)||(7075273-7075338)
chr1 (1-66)||(10100456-10100521)
chr1 (1-66)||(38737438-38737503)
chr1 (1-57)||(2138972-2139028)
chr1 (1-57)||(5606334-5606390)
chr1 (1-57)||(5945834-5945890)
chr1 (1-57)||(31971456-31971512)
chr1 (1-57)||(38786889-38786945)
chr1 (1-57)||(44741412-44741468)
chr1 (1-57)||(50295879-50295935)
chr1 (1-57)||(52749350-52749406)
[»] chr8 (22 HSPs)
chr8 (1-57)||(1226573-1226629)
chr8 (10-112)||(27563031-27563131)
chr8 (2-57)||(23849684-23849739)
chr8 (1-110)||(27505695-27505804)
chr8 (3-57)||(35793637-35793691)
chr8 (1-66)||(14378622-14378687)
chr8 (2-111)||(29802664-29802773)
chr8 (6-55)||(32061242-32061291)
chr8 (1-57)||(42786034-42786090)
chr8 (1-56)||(7431255-7431310)
chr8 (2-65)||(25118847-25118910)
chr8 (12-66)||(3466343-3466397)
chr8 (1-67)||(23437749-23437815)
chr8 (1-66)||(1156514-1156579)
chr8 (1-66)||(21132864-21132929)
chr8 (1-66)||(27301922-27301987)
chr8 (1-66)||(30464492-30464557)
chr8 (1-57)||(5777490-5777546)
chr8 (9-57)||(5936629-5936677)
chr8 (1-57)||(9459228-9459284)
chr8 (1-57)||(25256469-25256525)
chr8 (12-56)||(43950353-43950397)
[»] chr4 (19 HSPs)
chr4 (3-111)||(19533961-19534069)
chr4 (40-112)||(30733897-30733969)
chr4 (11-111)||(42862238-42862338)
chr4 (1-66)||(4271952-4272017)
chr4 (1-66)||(14958135-14958200)
chr4 (1-66)||(28914428-28914493)
chr4 (1-66)||(39195550-39195615)
chr4 (1-57)||(50684989-50685045)
chr4 (12-66)||(18881306-18881360)
chr4 (12-66)||(37164076-37164130)
chr4 (3-56)||(10181126-10181178)
chr4 (1-66)||(31152721-31152786)
chr4 (13-58)||(36662649-36662694)
chr4 (1-66)||(43047447-43047512)
chr4 (1-66)||(43447225-43447290)
chr4 (1-66)||(53987718-53987783)
chr4 (2-66)||(1613157-1613221)
chr4 (1-57)||(10384917-10384973)
chr4 (1-57)||(42185343-42185399)
[»] scaffold0316 (1 HSPs)
scaffold0316 (10-111)||(7492-7593)
[»] scaffold0196 (1 HSPs)
scaffold0196 (10-111)||(26248-26349)
[»] chr7 (20 HSPs)
chr7 (1-57)||(38198617-38198673)
chr7 (1-65)||(14201513-14201579)
chr7 (7-57)||(5887909-5887959)
chr7 (1-66)||(35265760-35265825)
chr7 (2-55)||(46074425-46074478)
chr7 (1-57)||(40231997-40232053)
chr7 (2-56)||(36901585-36901637)
chr7 (8-66)||(28016175-28016233)
chr7 (9-55)||(31661127-31661173)
chr7 (11-57)||(31883205-31883251)
chr7 (1-66)||(4088775-4088840)
chr7 (1-66)||(9173275-9173340)
chr7 (5-66)||(10464175-10464236)
chr7 (1-66)||(16807085-16807150)
chr7 (5-66)||(35500807-35500868)
chr7 (1-66)||(38069111-38069176)
chr7 (1-57)||(5842186-5842242)
chr7 (1-65)||(7460995-7461059)
chr7 (34-66)||(18756659-18756691)
chr7 (1-57)||(38353537-38353593)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-66)||(5436-5501)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-66)||(184026-184091)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 34278708 - 34278818
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattag 100  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||   ||||| |||||||    
T  34278708 cgaatctaacaacatcttatatgttatattttgtctttatatattagtagaaaaataaggtcaaaacatgttatatgaacaatacacattttaaaattag 34278807  T
Q  101 gtcatttaaaa 111  Q
    ||||| |||||    
T  34278808 gtcatataaaa 34278818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 41625283 - 41625385
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggtcatttaa 109  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||| | ||| ||||||||||  |||||| |||||  |||||||||    
T  41625283 caacatcttatatactatattttgtctttatatattaatagaaaaatagagtcaaagcgtgttacatgaacaatatatatttttaaattgtgtcatttaa 41625382  T
Q  110 aac 112  Q
    |||    
T  41625383 aac 41625385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 26440594 - 26440703
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattagg 101  Q
    |||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| || ||||| | ||| ||||||||||  |||||| | |||||     
T  26440594 gaatccaacaccatcttatatcctatattttgtcgttatatattagtagaaaaataaggttaaagcatgttaaatgaacaatacatattttcagattaga 26440693  T
Q  102 tcatttaaaa 111  Q
    ||||||||||    
T  26440694 tcatttaaaa 26440703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 6500253 - 6500182
Alignment:
Q  9 acaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaac 80  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||  | ||||||||||    
T  6500253 acaacatcttatatgctatattttgtctttatatattaatagaaaaatagagtcaaagtatgttatatgaac 6500182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 6175074 - 6175174
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggtcatttaa 109  Q
    ||||||||||||||||||||||||||||||||||||| || |||||| || ||||||  ||||||||||| ||| || ||||| |||||||| | |||||    
T  6175074 caacatcttatatgctatattttgtctttatatattaataaaaaaattaaatcaaagtatattatatgaataat-ataattttaaaattaggccctttaa 6175172  T
Q  110 aa 111  Q
    ||    
T  6175173 aa 6175174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 35641892 - 35641829
Alignment:
Q  3 aatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||||| ||||||| |||  ||| ||||||||||||||||||||||||  |||||||    
T  35641892 aatccaacaacattttatatgatattatttatctttatatattagtagaaaaatatggtcaaag 35641829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21031760 - 21031706
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaa 55  Q
    |||||||||||||||||||||| ||| | ||||||||| |||||||||| |||||    
T  21031760 cgaatccaacaacatcttatatactacaatttgtctttgtatattagtaaaaaaa 21031706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2551566 - 2551622
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| |||||||||||||||  |||  ||| ||||||||||||||||||||||||    
T  2551566 cgaatctaacaacatcttatataatattatttatctttatatattagtagaaaaata 2551622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5985064 - 5985008
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||||||||| |||||||||| |||  ||| ||||| ||||||||||||||||||    
T  5985064 cgaatccaacaatatcttatatgatattatttatctttgtatattagtagaaaaata 5985008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 13985728 - 13985783
Alignment:
Q  11 aacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||||| |||| ||||||||| ||||||| |||||||||| | ||||||    
T  13985728 aacatcttatatgttataatttgtctttgtatattaatagaaaaatataatcaaag 13985783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27674633 - 27674671
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtcttta 39  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  27674633 cgaatccaacaacatcttatatgatatattttatcttta 27674671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 28143046 - 28142988
Alignment:
Q  8 aacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  28143046 aacaacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 28142988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 1098300 - 1098235
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  1098300 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 1098235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1830791 - 1830856
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||||||||||| ||| |||  ||| |||||||  |||||||||||||||  |||||||    
T  1830791 cgaatccaacaacatcttacatgatattatttatctttatgaattagtagaaaaatatggtcaaag 1830856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 6734906 - 6734853
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaa 54  Q
    |||||| ||| |||||||||||| |||  ||| |||||||||||||||||||||    
T  6734906 cgaatctaacgacatcttatatgatattatttatctttatatattagtagaaaa 6734853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 13548338 - 13548273
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  13548338 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 13548273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 20022985 - 20022920
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  20022985 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 20022920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 20040354 - 20040419
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  20040354 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 20040419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 21744004 - 21743923
Alignment:
Q  11 aacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattatttt 92  Q
    |||||||||||||||||  |||||| ||| |||||| || ||||||| ||||||||| | |||| |||| |||  |||||||    
T  21744004 aacatcttatatgctattatttgtcattacatattaataaaaaaatagagtcaaagcatgttatgtgaataatgtttatttt 21743923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 30211680 - 30211745
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  30211680 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 30211745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 41263068 - 41263133
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  41263068 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 41263133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2864090 - 2864146
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||||||| |||  ||| ||||| |  |||||||||||||||    
T  2864090 cgaatccaacaacatcttatatgatattatttatctttgtgaattagtagaaaaata 2864146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9936827 - 9936883
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  9936827 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 9936883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 19344638 - 19344694
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  19344638 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 19344694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40316258 - 40316314
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||| ||| |||  ||| |||||||  |||||||||||||||    
T  40316258 cgaatccaacaacatcttacatgatattatttatctttatgaattagtagaaaaata 40316314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40316943 - 40316887
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  40316943 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 40316887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41410598 - 41410654
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  41410598 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 41410654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 26210872 - 26210764
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattag 100  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||| |||||| | | ||||| ||||||||  |||||| |||||||    
T  26210872 cgaatccaacaacatcttatataatatattttgtctttataaattagtagaaaaataaggtcaaatcatgttatacgaacaatatgtatttttaaattag 26210773  T
Q  101 gtcatttaa 109  Q
    |||||||||    
T  26210772 gtcatttaa 26210764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 26240879 - 26240770
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattag 100  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| | ||||||||||||| | |  ||||| ||| |||    
T  26240879 cgaatccaacaacatcttatatgttatatttgg-ctttatatattagtagaaaaataaggtcaaaacatattatatgaacattgaagatttttaaaatag 26240781  T
Q  101 gtcatttaaaa 111  Q
    |||||||||||    
T  26240780 gtcatttaaaa 26240770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 7632333 - 7632291
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatata 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  7632333 cgaatccaacaacatcttatatgttatattttgtctttatata 7632291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 995688 - 995623
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| |||||||||||||||||| ||||||||    
T  995688 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatagtcaaag 995623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2656613 - 2656678
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| |||||||||||||||||| ||||||||    
T  2656613 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatagtcaaag 2656678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10105936 - 10105880
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||||||||||||||||||||||    
T  10105936 cgaatctaacgacatcttatatgatattatttatctttatatattagtagaaaaata 10105880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 16661547 - 16661610
Alignment:
Q  3 aatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||| ||| |||||||||||| |||  ||| ||||||||||||||||||||||||  |||||||    
T  16661547 aatctaacgacatcttatatgatattatttatctttatatattagtagaaaaatacggtcaaag 16661610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 24693262 - 24693207
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||||| ||||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  24693262 gaatccaaaaacatcttatatgatattatttatctttgtatattagtagaaaaata 24693207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 7632022 - 7631956
Alignment:
Q  45 tagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggtcatttaaaa 111  Q
    ||||| ||||||||||||||||| | ||||||||||| ||  |||||| ||| |||||| |||||||    
T  7632022 tagtaaaaaaataaagtcaaagcatgttatatgaacattatatattttcaaactaggtcgtttaaaa 7631956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 24718137 - 24718187
Alignment:
Q  7 caacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||| ||||||   |||||||||||||| |||||||||||||    
T  24718137 caacaacatcttagatgctactatttgtctttatataatagtagaaaaata 24718187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2397895 - 2397830
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  2397895 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 2397830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2667268 - 2667333
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| | |||||||||||||||| ||||||||    
T  2667268 cgaatctaacgacatcttatatgatattatttatctttgtttattagtagaaaaatatagtcaaag 2667333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4890069 - 4890134
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  4890069 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 4890134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 11973454 - 11973417
Alignment:
Q  20 tatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  11973454 tatgctatattttatctttatatattagtacaaaaata 11973417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24798489 - 24798554
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  24798489 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 24798554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 24825290 - 24825225
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  24825290 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 24825225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30699386 - 30699321
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  30699386 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 30699321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32541420 - 32541485
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  32541420 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 32541485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33121678 - 33121743
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||||||||||| ||| |||  ||| |||||||  |||||||||||||||  |||||||    
T  33121678 cgaatccaacaacatcttacatgatattatttatctttatgaattagtagaaaaatatggtcaaag 33121743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2141693 - 2141637
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  2141693 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 2141637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6142450 - 6142506
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  6142450 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 6142506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 19788703 - 19788647
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||| ||| |||  ||| | ||| ||||||||||||||||||    
T  19788703 cgaatccaacaacatcttacatgatattatttatatttgtatattagtagaaaaata 19788647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29514969 - 29515025
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  29514969 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 29515025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 40415045 - 40414939
Alignment:
Q  3 aatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggt 102  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||  ||||| | |||||||||||  ||||  ||||| ||||||| |    
T  40415045 aatccaacaaaatcttatatgatatattttgtctttatatattagtagaaaaataagatcaaaacatattatatgaatcataaacatttttaaattagat 40414946  T
Q  103 catttaa 109  Q
    |||||||    
T  40414945 catttaa 40414939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 4016559 - 4016514
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaa 55  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||    
T  4016559 caacatcttatatgatatattttgtctttatatattagtaaaaaaa 4016514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 22755615 - 22755515
Alignment:
Q  11 aacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggtcatttaaa 110  Q
    |||||||||||||| ||| ||||||||| ||||| ||||||||||||  |||||| | | |||| |||| | |    |||||||||||||||||||||||    
T  22755615 aacatcttatatgcaataatttgtctttgtatataagtagaaaaatatggtcaaaacatgttatgtgaatagtgcacattttgaaattaggtcatttaaa 22755516  T
Q  111 a 111  Q
    |    
T  22755515 a 22755515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 48690189 - 48690245
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  48690189 cgaatccaacaacatcttatatgatattatttatctttgtatattagtagaaaaata 48690245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28958933 - 28958998
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||||||||||||||||||||||  |||||||    
T  28958933 cgaatctaacgacatcttatatgatattatttatctttatatattagtagaaaaatatggtcaaag 28958998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29720520 - 29720464
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||||||| |||||||||||| |||  ||| ||||||||||||||| ||||||||    
T  29720520 cgaatccaacgacatcttatatgatattatttatctttatatattagtggaaaaata 29720464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 46866468 - 46866412
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| |||||||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  46866468 cgaatctaacaacatcttatatgatattatttatctttgtatattagtagaaaaata 46866412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 18971494 - 18971549
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaa 65  Q
    |||||||||||||| |||  ||| | |||||||||||||||||||||| |||||||    
T  18971494 caacatcttatatgatattatttatttttatatattagtagaaaaatatagtcaaa 18971549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 47340019 - 47340074
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||| ||| |||||||||||| |||  ||| ||||||||||||||||||||||||    
T  47340019 gaatctaacgacatcttatatgatattatttatctttatatattagtagaaaaata 47340074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 53274930 - 53274985
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||| |||||||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  53274930 gaatctaacaacatcttatatgatattatttatctttgtatattagtagaaaaata 53274985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 28562257 - 28562203
Alignment:
Q  3 aatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||| ||| |||  |||||||  |||||||||||||||||||    
T  28562257 aatccaacaacatcttacatgttatcatttgtctacatatattagtagaaaaata 28562203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 9484721 - 9484656
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  9484721 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 9484656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 12948165 - 12948100
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  12948165 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 12948100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 23369174 - 23369219
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaa 55  Q
    |||||||||| ||| |||| |||||||||||||||||||| |||||    
T  23369174 caacatcttacatgatatagtttgtctttatatattagtaaaaaaa 23369219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29455642 - 29455707
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  29455642 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 29455707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29793312 - 29793377
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  29793312 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 29793377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34263638 - 34263703
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  34263638 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 34263703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34555276 - 34555211
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  34555276 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 34555211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42098561 - 42098626
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  42098561 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 42098626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48927736 - 48927801
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  48927736 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 48927801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49076360 - 49076425
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  49076360 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 49076425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 901022 - 901078
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  901022 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 901078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 3086278 - 3086342
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||| |||||||||| |||  ||| ||||| |||||||||| |||||||  |||||||    
T  3086278 gaatccaacaatatcttatatgatattatttatctttgtatattagtaaaaaaatatggtcaaag 3086342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 28389210 - 28389262
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaa 54  Q
    |||| ||||||||||||||||||||   ||||||||| |||||||||| ||||    
T  28389210 gaattcaacaacatcttatatgctaacatttgtctttgtatattagtaaaaaa 28389262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34669733 - 34669677
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  34669733 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 34669677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36179070 - 36179126
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  36179070 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 36179126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 52094028 - 52094084
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  52094028 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 52094084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 14802910 - 14802965
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14802910 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 14802965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 33740689 - 33740611
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaa 79  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||    
T  33740689 cgaatccaacaacttcttaaatgctatattttgtctttatatattaatagaaaaatagagtcaaagcatgttatatgaa 33740611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 45001822 - 45001932
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattag 100  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||   | ||||||||| ||||   ||||| ||| |||    
T  45001822 cgaatccgacaacattttatatgctatattttgtctttatatattagcagaaaaatagagtcaaaatatgttatatgaataatacacattttaaaactag 45001921  T
Q  101 gtcatttaaaa 111  Q
     ||||||||||    
T  45001922 atcatttaaaa 45001932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 24853374 - 24853308
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagc 67  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||||    
T  24853374 cgaatccagcaacatcttatatgctatattttctctttatatattaatataaaaataatgtcaaagc 24853308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 25765754 - 25765691
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaa 65  Q
    |||| ||||||||| ||||||| |||| ||||||||||||||| ||||||||||||| ||||||    
T  25765754 gaattcaacaacatattatatgttataatttgtctttatatatgagtagaaaaataaggtcaaa 25765691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31975471 - 31975580
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattag 100  Q
    |||||| ||||| |||||||||| |||||||| || |||||||||||||||||||||   |||||   | |||| ||| |||||   ||||| |||||||    
T  31975471 cgaatctaacaatatcttatatgatatattttatcattatatattagtagaaaaataggatcaaactatgttatgtgagcaatacacatttttaaattag 31975570  T
Q  101 gtcatttaaa 110  Q
    ||||||||||    
T  31975571 gtcatttaaa 31975580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 36931737 - 36931683
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaa 55  Q
    ||||||||||||||||||||||| |||  ||| |||||||||||||||| |||||    
T  36931737 cgaatccaacaacatcttatatgatattatttatctttatatattagtaaaaaaa 36931683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5096373 - 5096317
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||||||||||||||||||||||    
T  5096373 cgaatctaacgacatcttatatgatattatttatctttatatattagtagaaaaata 5096317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 12209113 - 12209049
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  12209113 gaatccaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 12209049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 15300314 - 15300358
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaa 54  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||    
T  15300314 caacatcttatatgccatcatttgtctttatatattagtagaaaa 15300358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7443016 - 7442963
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaa 54  Q
    ||||||||||||||||||| ||| ||| |||| ||||| || ||||||||||||    
T  7443016 cgaatccaacaacatcttacatgatattttttatctttgtaaattagtagaaaa 7442963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7724549 - 7724614
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  7724549 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 7724614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8373559 - 8373494
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  8373559 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 8373494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38963920 - 38963855
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  38963920 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 38963855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41436957 - 41436892
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  41436957 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 41436892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 3566263 - 3566223
Alignment:
Q  17 ttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||| |||||| ||||||||||||||||||||| |||||||    
T  3566263 ttatgtgctatgttttgtctttatatattagtacaaaaata 3566223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4137534 - 4137478
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  4137534 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 4137478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10333516 - 10333572
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  10333516 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 10333572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 11383983 - 11384039
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||| ||| |||  ||| ||||||||||||||||||||||||    
T  11383983 cgaatctaacgacatcttacatgatattatttatctttatatattagtagaaaaata 11384039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 30708864 - 30708920
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||| ||| |||  ||| ||||| || |||||||||||||||    
T  30708864 cgaatccaacaacatcttacatgatattatttatctttgtaaattagtagaaaaata 30708920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45036488 - 45036432
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  45036488 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 45036432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 32834915 - 32834807
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattagg 101  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||   ||||| |  ||||||||  || ||  |||||| ||||||||    
T  32834915 gaatccaacatcatcttatatgttatattttgtctttatatattagtagaaaaataggatcaaaacaaattatatg-tcattacatatttttaaattagg 32834817  T
Q  102 tcatttaaaa 111  Q
    ||||||||||    
T  32834816 tcatttaaaa 32834807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 8980799 - 8980743
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8980799 cgaattcaacaacatcttatatgctatattttgtctttatatattaatagaaaaata 8980743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 13971738 - 13971793
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaa 65  Q
    ||||||||||||||||||||||||| ||||||| |||||| ||||||| |||||||    
T  13971738 caacatcttatatgctatattttgtttttatatgttagtaaaaaaatagagtcaaa 13971793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 43891518 - 43891470
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaataa 58  Q
    |||||||||||||  |||||||||||| |||||||||||||||||||||    
T  43891518 caacatcttatatattatattttgtctgtatatattagtagaaaaataa 43891470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 40711048 - 40711098
Alignment:
Q  10 caacatcttatatgctatattttgtctt--tatatattagtagaaaaataa 58  Q
    |||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  40711048 caacatcttatatgttatattttgtctttatatatattagtagaaaaataa 40711098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3277622 - 3277678
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||| ||||||||||||||||  |||  ||| ||||||||||||||||||||||||    
T  3277622 cgaatacaacaacatcttatattatattatttatctttatatattagtagaaaaata 3277678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 1191249 - 1191199
Alignment:
Q  7 caacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||| |||||||||| | ||| |||||||||| |||||||||||||    
T  1191249 caacaacattttatatgctacaatttatctttatataatagtagaaaaata 1191199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3529312 - 3529377
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||||||||||| ||| |||  ||| |||||||  |||||||||||||||  |||||||    
T  3529312 cgaatccaacaacatcttacatgatattatttatctttatgaattagtagaaaaatatggtcaaag 3529377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6017392 - 6017457
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  6017392 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 6017457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7075273 - 7075338
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  7075273 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 7075338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 10100456 - 10100521
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  10100456 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 10100521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38737503 - 38737438
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| |||||||||||| ||| ||   ||| |||||||||||||||||||||||| | ||||||    
T  38737503 cgaatcaaacaacatcttacatgataatgtttatctttatatattagtagaaaaatacaatcaaag 38737438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2138972 - 2139028
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  2138972 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 2139028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5606334 - 5606390
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  5606334 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 5606390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5945890 - 5945834
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  5945890 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 5945834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31971512 - 31971456
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||||||| |||  ||| ||||| |  |||||||||||||||    
T  31971512 cgaatccaacaacatcttatatgatattatttatctttgttaattagtagaaaaata 31971456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38786889 - 38786945
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| |||||||||||||||| |||  ||| ||||| ||||||||| ||||||||    
T  38786889 cgaatctaacaacatcttatatgatattatttatctttgtatattagttgaaaaata 38786945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 44741468 - 44741412
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  44741468 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 44741412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 50295879 - 50295935
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| |||||||||||||||| |||  ||| ||||| |||||||| |||||||||    
T  50295879 cgaatctaacaacatcttatatgatattatttatctttgtatattagcagaaaaata 50295935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 52749406 - 52749350
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  52749406 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 52749350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 1226629 - 1226573
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  1226629 cgaatccaacaacatcttatatgctattttttgtttttatatattagtagaaaaata 1226573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 27563031 - 27563131
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggtcatttaa 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||  | | ||||||||||| |   || ||| ||||| ||||||||||    
T  27563031 caacatcttatatgctatattttatctttatatattagtagaaaaatagagtcaa--catgttatatgaacagtgcatacttttaaattgggtcatttaa 27563128  T
Q  110 aac 112  Q
    |||    
T  27563129 aac 27563131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 23849739 - 23849684
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||    
T  23849739 gaatccaacaaaatcttatatgttatattttgtctttatatatttgtagaaaaata 23849684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 27505804 - 27505695
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattag 100  Q
    |||||| ||||| |||||||||||||||||| || |||||||||| ||| | |||||| |||||||| | ||||||||| | ||    |||| |||||||    
T  27505804 cgaatctaacaagatcttatatgctatatttcgtatttatatatttgtaaataaataaggtcaaagcatgttatatgaatagtacacttttttaaattag 27505705  T
Q  101 gtcatttaaa 110  Q
    ||||||||||    
T  27505704 gtcatttaaa 27505695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 35793691 - 35793637
Alignment:
Q  3 aatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||||||||||||||||||||||| ||||  |||||||| |||||||||||||    
T  35793691 aatccaacaacatcttatatgctataatttgattttatataatagtagaaaaata 35793637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14378622 - 14378687
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| |||||||||||||||||||||||| ||||||||    
T  14378622 cgaatctaacgacatcttatatgatattatttatctttatatattagtagaaaaatatagtcaaag 14378687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 111
Target Start/End: Original strand, 29802664 - 29802773
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattagg 101  Q
    ||||| || ||||| ||||||||||    |||||||| ||||||||||||||||||  |||||| | ||||||||||| ||||   ||||| ||||||||    
T  29802664 gaatctaaaaacatattatatgctaccacttgtctttgtatattagtagaaaaatatggtcaaaacatattatatgaataatacacattttcaaattagg 29802763  T
Q  102 tcatttaaaa 111  Q
    |||| |||||    
T  29802764 tcatataaaa 29802773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 32061242 - 32061291
Alignment:
Q  6 ccaacaacatcttatatgctatattttgtctttatatattagtagaaaaa 55  Q
    |||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  32061242 ccaacaacatcttatatgatataatttgtctttgtatattagtagaaaaa 32061291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42786034 - 42786090
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||||||| |||  ||| ||||| ||||||| ||||||||||    
T  42786034 cgaatccaacaacatcttatatgatattatttatctttgtatattaatagaaaaata 42786090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7431255 - 7431310
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaat 56  Q
    |||||| |||||||||||||||| |||  ||| ||||| |||||||||||||||||    
T  7431255 cgaatctaacaacatcttatatgatattatttatctttgtatattagtagaaaaat 7431310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 25118910 - 25118847
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaa 65  Q
    ||||||||| |||||||||||| |||  ||| ||||| |||||||||||||||| || ||||||    
T  25118910 gaatccaacgacatcttatatgatattatttatctttgtatattagtagaaaaagaaggtcaaa 25118847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 3466397 - 3466343
Alignment:
Q  12 acatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||||||||| |||  ||| ||||| |||||||||||||||||||| ||||||    
T  3466397 acatcttatatgatattatttatctttgtatattagtagaaaaataaaatcaaag 3466343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23437749 - 23437815
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagc 67  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  ||||||||    
T  23437749 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaagc 23437815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1156514 - 1156579
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||||| |||||||||| |||  ||| | ||||||||| |||||||||||| ||||||||    
T  1156514 cgaatctaacaatatcttatatgatattatttatttttatatatcagtagaaaaatacagtcaaag 1156579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21132864 - 21132929
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  21132864 cgaatctaacgacatcttatatgatattatttttctttgtatattagtagaaaaatatggtcaaag 21132929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 27301987 - 27301922
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  27301987 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatattgtcaaag 27301922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30464557 - 30464492
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  30464557 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 30464492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5777490 - 5777546
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  5777490 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 5777546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 5936677 - 5936629
Alignment:
Q  9 acaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||| |||||||| ||||||||| | |||| |||||||    
T  5936677 acaacatcttatatgttatattttctctttatatgtaagtaaaaaaata 5936629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9459228 - 9459284
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||||| || ||||||| |||  ||| ||||||||||||||||||||||||    
T  9459228 cgaatctaacaatattttatatgatattatttatctttatatattagtagaaaaata 9459284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25256469 - 25256525
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||| ||| |||  ||| ||||| || |||||||||||||||    
T  25256469 cgaatccaacaacatcttacatgatattatttatctttgtaaattagtagaaaaata 25256525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 43950353 - 43950397
Alignment:
Q  12 acatcttatatgctatattttgtctttatatattagtagaaaaat 56  Q
    |||||||||||||||   ||||||| |||||||||||||||||||    
T  43950353 acatcttatatgctaccatttgtctatatatattagtagaaaaat 43950397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 111
Target Start/End: Original strand, 19533961 - 19534069
Alignment:
Q  3 aatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggt 102  Q
    |||||||||| ||||||||||| | | ||||||||| ||||||||||||||||||  |||||||  | ||||||||| |||   |||||| |||||||||    
T  19533961 aatccaacaatatcttatatgccacaatttgtctttgtatattagtagaaaaatattgtcaaagtatgttatatgaataatgcatattttcaaattaggt 19534060  T
Q  103 catttaaaa 111  Q
    |||||||||    
T  19534061 catttaaaa 19534069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 30733897 - 30733969
Alignment:
Q  40 tatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggtcatttaaaac 112  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||  |||||| ||||| |||| ||||||||    
T  30733897 tatattagtagaaaaatagagtcaaagcatattatatgaacaatacatatttttaaattgggtcgtttaaaac 30733969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 42862238 - 42862338
Alignment:
Q  11 aacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggtcatttaaa 110  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||| | | |  | |||||||||   ||||| |||||||||||||||||    
T  42862238 aacatcttatatgttatattttatctttatatattagtagaaatatagagtcaaaacatgtattgtgaacaatacacatttttaaattaggtcatttaaa 42862337  T
Q  111 a 111  Q
    |    
T  42862338 a 42862338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4271952 - 4272017
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||||||||||| |||||||||| ||||||||    
T  4271952 cgaatcaaacgacatcttatatgatattatttatctttatatattaatagaaaaatacagtcaaag 4272017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14958135 - 14958200
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||||||||||||||| |||  ||| | ||| ||||||||||||||||||  |||||||    
T  14958135 cgaatccaacaacatcttatatgatattatttatttttgtatattagtagaaaaatatggtcaaag 14958200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28914493 - 28914428
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||||||||||||||||||||||  |||||||    
T  28914493 cgaatctaacgacatcttatatgatattatttatctttatatattagtagaaaaatatggtcaaag 28914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 39195615 - 39195550
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||||||||||||||| |||  ||| ||||| |||||||||| |||||||  |||||||    
T  39195615 cgaatccaacaacatcttatatgatattatttatctttgtatattagtataaaaatatggtcaaag 39195550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 50685045 - 50684989
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||||||||||||||||||||||    
T  50685045 cgaatctaacgacatcttatatgatattatttatctttatatattagtagaaaaata 50684989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 18881306 - 18881360
Alignment:
Q  12 acatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||||||||| |||  ||| ||||| |||||||||||||||||| ||||||||    
T  18881306 acatcttatatgatattatttatctttgtatattagtagaaaaatatagtcaaag 18881360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 37164130 - 37164076
Alignment:
Q  12 acatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||||||||| |||  ||| ||||| |||||||||||||||||| ||||||||    
T  37164130 acatcttatatgatattatttatctttgtatattagtagaaaaatatagtcaaag 37164076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 10181126 - 10181178
Alignment:
Q  3 aatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaat 56  Q
    ||||||||||||||||||| | |||| ||| ||||| |||||||||||||||||    
T  10181126 aatccaacaacatcttatacgatata-tttatctttgtatattagtagaaaaat 10181178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31152786 - 31152721
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  31152786 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 31152721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 36662649 - 36662694
Alignment:
Q  13 catcttatatgctatattttgtctttatatattagtagaaaaataa 58  Q
    ||||||||||| |||  ||| |||||||||||||||||||||||||    
T  36662649 catcttatatgatattatttatctttatatattagtagaaaaataa 36662694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43047512 - 43047447
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  43047512 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 43047447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43447290 - 43447225
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  43447290 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 43447225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 53987718 - 53987783
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  53987718 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 53987783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 1613157 - 1613221
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  1613157 gaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 1613221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10384973 - 10384917
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  10384973 cgaatctaacgacatcttatatgttattatttatctttgtatattagtagaaaaata 10384917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 42185399 - 42185343
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| |||||||| ||||||| |||  ||| ||||| ||||||||||||||||||    
T  42185399 cgaatctaacaacattttatatgatattatttatctttgtatattagtagaaaaata 42185343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 7492 - 7593
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggtcatttaa 109  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||   |||||   |||||| | ||||||   |||||| |||||| |||||||||    
T  7492 caacattttatatgctatattttgtctttatatattagtacaaaaatacgatcaaattatattatgtaaacaatgcatatttttaaattatgtcatttaa 7591  T
Q  110 aa 111  Q
    ||    
T  7592 aa 7593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 26349 - 26248
Alignment:
Q  10 caacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaagcttattatatgaacaataattattttgaaattaggtcatttaa 109  Q
    |||||| || |||||||||||||||||||||||||||||| |||||||   |||||   |||||| | ||||||   |||||| |||||| |||||||||    
T  26349 caacattttttatgctatattttgtctttatatattagtacaaaaatatgatcaaattatattatgtaaacaatgcatatttttaaattatgtcatttaa 26250  T
Q  110 aa 111  Q
    ||    
T  26249 aa 26248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38198617 - 38198673
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  38198617 cgaatccaacaacatcttatatgatattatttatctttgtatattagtagaaaaata 38198673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14201513 - 14201579
Alignment:
Q  1 cgaatccaacaacatcttatatgctatatt--ttgtctttatatattagtagaaaaataaagtcaaa 65  Q
    ||||||||||||||||||||||| | ||||  || ||||| ||||||||||||||||||| ||||||    
T  14201513 cgaatccaacaacatcttatatgatgtattatttatctttgtatattagtagaaaaataatgtcaaa 14201579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 5887959 - 5887909
Alignment:
Q  7 caacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||||||| |||  ||||||||| ||||||||||||||||||    
T  5887959 caacaacatcttatatgatatcatttgtctttgtatattagtagaaaaata 5887909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35265760 - 35265825
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| |||||||||||||||||| ||||||||    
T  35265760 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatagtcaaag 35265825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 46074478 - 46074425
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaa 55  Q
    |||||||||||||||||||||| |||  ||| |||||||||||||||| |||||    
T  46074478 gaatccaacaacatcttatatgatattatttatctttatatattagtaaaaaaa 46074425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40232053 - 40231997
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||||||||||||||||||||||    
T  40232053 cgaatctaacgacatcttatatgatattatttatctttatatattagtagaaaaata 40231997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 36901585 - 36901637
Alignment:
Q  2 gaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaat 56  Q
    ||||||||||||||||||||||  ||||||| |||||  ||||||||||||||||    
T  36901585 gaatccaacaacatcttatatg--atattttatctttgcatattagtagaaaaat 36901637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 28016233 - 28016175
Alignment:
Q  8 aacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  28016233 aacaacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 28016175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 31661127 - 31661173
Alignment:
Q  9 acaacatcttatatgctatattttgtctttatatattagtagaaaaa 55  Q
    ||||||||||||||| |||  ||||| ||||||||||||||||||||    
T  31661127 acaacatcttatatgttattatttgtgtttatatattagtagaaaaa 31661173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 31883251 - 31883205
Alignment:
Q  11 aacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    ||||||||||||| |||  ||||| ||||||||||||||||||||||    
T  31883251 aacatcttatatgttatcatttgtgtttatatattagtagaaaaata 31883205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 4088775 - 4088840
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||| |||||||||| ||||||||    
T  4088775 cgaatctaacgacatcttatatgatattatttatctttgtatattaatagaaaaatacagtcaaag 4088840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9173275 - 9173340
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  9173275 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 9173340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 10464236 - 10464175
Alignment:
Q  5 tccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||||||||||| |||  ||| |||||||  |||||||||||||||  |||||||    
T  10464236 tccaacaacatcttatatgatattatttatctttatgaattagtagaaaaatatggtcaaag 10464175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16807085 - 16807150
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  16807085 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 16807150  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 35500868 - 35500807
Alignment:
Q  5 tccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    ||||||||||||||| ||| |||  ||| |||||||  ||||||||||||||| ||||||||    
T  35500868 tccaacaacatcttacatgatattatttatctttatgaattagtagaaaaatatagtcaaag 35500807  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 38069176 - 38069111
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  38069176 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 38069111  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 5842242 - 5842186
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| |||||||||||||||| |||||||    
T  5842242 cgaatctaacgacatcttatatgatattatttatctttatatattagtataaaaata 5842186  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 7460995 - 7461059
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaa 65  Q
    |||||||||| |||||||||||| |||  ||| ||||| |||||||||  ||||||| |||||||    
T  7460995 cgaatccaacgacatcttatatgatattatttatctttttatattagtgaaaaaatacagtcaaa 7461059  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 18756691 - 18756659
Alignment:
Q  34 tctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||||||||||||||||||||| ||||||||    
T  18756691 tctttatatattagtagaaaaatatagtcaaag 18756659  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38353537 - 38353593
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaata 57  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||    
T  38353537 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaata 38353593  T

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Target: scaffold0221 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 5501 - 5436
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  5501 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 5436  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 184091 - 184026
Alignment:
Q  1 cgaatccaacaacatcttatatgctatattttgtctttatatattagtagaaaaataaagtcaaag 66  Q
    |||||| ||| |||||||||||| |||  ||| ||||| ||||||||||||||||||  |||||||    
T  184091 cgaatctaacgacatcttatatgatattatttatctttgtatattagtagaaaaatatggtcaaag 184026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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