View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2737_high_5 (Length: 247)
Name: NF2737_high_5
Description: NF2737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2737_high_5 |
 | |
|
| [»] scaffold0927 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26314508 - 26314747
Alignment:
| Q |
1 |
ccatcaagaccattttgatctccactctgcaatcaagataattcttatgattagaactttacatttaacaattgagttaattggttgaacaatttagtcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26314508 |
ccatcaagaccattttgatctccactctgcaatcatgatggttcttataattagaactttacatttaacaattgagttaattggttgaacaatttaatca |
26314607 |
T |
|
| Q |
101 |
ataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgaca |
200 |
Q |
| |
|
| ||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26314608 |
aatacttgtttaattttctaatttaggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaattttcgccactgaatatatgaca |
26314707 |
T |
|
| Q |
201 |
tctgggaatttttcatccaagatatcaattgtctcctttg |
240 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26314708 |
tttgggaatttttcatccaagatatcaattgtctcctttg |
26314747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28566616 - 28566859
Alignment:
| Q |
1 |
ccatcaagaccattttgatctccactctgcaatcaa----gataattcttatgattagaactttacatttaacaattgagttaattggttgaacaattta |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
28566616 |
ccatcaagaccattttgatctccactctgcattcatccatgataactcttatcattagaactttacatttaacaatcgagttaagtggttgaacaattta |
28566715 |
T |
|
| Q |
97 |
gtcgataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatat |
196 |
Q |
| |
|
|||| ||||| |||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28566716 |
atcgaatacttgtttaatattctaatttaggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatat |
28566815 |
T |
|
| Q |
197 |
gacatctgggaatttttcatccaagatatcaattgtctcctttg |
240 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28566816 |
aacatttgggaaattttcatccaagatatcaattgtctcctttg |
28566859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 28584591 - 28584826
Alignment:
| Q |
1 |
ccatcaagaccattttgatctccactctgcaatcaa----gataattcttatgattagaactttacatttaacaattgagttaattggttgaacaattta |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
28584591 |
ccatcaagaccattttgatctccactctgcattcatccatgataattcttatcattagaactttacatttaacaatcgagttaagtggttgaacaattta |
28584690 |
T |
|
| Q |
97 |
gtcgataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatat |
196 |
Q |
| |
|
|||| ||||| |||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28584691 |
atcgaatacttgtttaatattctaatttaggagacatatttcataccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatat |
28584790 |
T |
|
| Q |
197 |
gacatctgggaatttttcatccaagatatcaattgt |
232 |
Q |
| |
|
||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
28584791 |
gacatttggaaacttttcatccaagatatcaattgt |
28584826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 38 - 232
Target Start/End: Original strand, 28573406 - 28573597
Alignment:
| Q |
38 |
ataattcttatgattagaactttacatttaacaattgagttaattggttgaacaatttagtcgataacttgcttaatactctaatttaggaaacatgttt |
137 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| || | | ||| |||||| |||||||||| |||| ||| |
|
|
| T |
28573406 |
ataattcttatcattagaactttacattttacaattgcgttaattggttgaacaatttaatcaaatatttgtttaata---taatttaggagacatattt |
28573502 |
T |
|
| Q |
138 |
cttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatctgggaatttttcatccaagatatcaattgt |
232 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
28573503 |
cataccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatttggaaacttttcatccaagatatcaattgt |
28573597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 20615835 - 20615924
Alignment:
| Q |
135 |
tttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatctgggaatttttcatccaagata |
224 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||| |||||| |||||| |
|
|
| T |
20615835 |
tttcttaccttaactccttctaaatcatcagagagacgaagaatttttgccactgaataaatgatatttggaaattcttcatctaagata |
20615924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 20615281 - 20615309
Alignment:
| Q |
1 |
ccatcaagaccattttgatctccactctg |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20615281 |
ccatcaagaccattttgatctccactctg |
20615309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 334 - 91
Alignment:
| Q |
4 |
tcaagaccattttgatctccactctgcaatcaag--------ataattcttatgattagaactttacatttaacaattgagttaattggttgaacaattt |
95 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
334 |
tcaagaccattttgatctccactctgcattcattcattgataataattcttatcattagaactttacattttacaattgtgttaattggttgaacaattt |
235 |
T |
|
| Q |
96 |
agtcgataacttgcttaatactctaatttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatata |
195 |
Q |
| |
|
| || | ||||| |||| | ||||||||| || | || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
234 |
aatcaaatacttgtttaa-attctaatttatgagatatatttcttaccttagctccttctaaatcatcagcgagacgaagaatttttgccactgaatata |
136 |
T |
|
| Q |
196 |
tgacatctgggaatttttcatccaagatatcaattgtctcctttg |
240 |
Q |
| |
|
| |||| ||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
135 |
taacatttggaaaattttcatccaagatatcagttgtctcctttg |
91 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 24070170 - 24070289
Alignment:
| Q |
121 |
atttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatctgggaatttttcatccaa |
220 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
24070170 |
atttgggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccaccgaatatatgacatttggaaatttttcatccaa |
24070269 |
T |
|
| Q |
221 |
gatatcaattgtctcctttg |
240 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
24070270 |
gatatcaactgtctcctttg |
24070289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 24080566 - 24080447
Alignment:
| Q |
121 |
atttaggaaacatgtttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaatatatgacatctgggaatttttcatccaa |
220 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||| |
|
|
| T |
24080566 |
atttgggagacatatttcttaccttagctccttctaaatcatcagagagacgaagaatttttgccaccgaatatatgacatttggaaaattttcatccaa |
24080467 |
T |
|
| Q |
221 |
gatatcaattgtctcctttg |
240 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
24080466 |
gatatcaactgtctcctttg |
24080447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 24070098 - 24070152
Alignment:
| Q |
38 |
ataattcttatgattagaactttacatttaacaattgagttaattggttgaacaat |
93 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| |||| ||| ||||||| |
|
|
| T |
24070098 |
ataattcttatcattagaactttacatttaacagttgag-taatcggtagaacaat |
24070152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 24080638 - 24080584
Alignment:
| Q |
38 |
ataattcttatgattagaactttacatttaacaattgagttaattggttgaacaat |
93 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||| |||| ||| ||||||| |
|
|
| T |
24080638 |
ataattcttatcattagaactttacatttaacagttgag-taatcggtagaacaat |
24080584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 2602861 - 2602807
Alignment:
| Q |
139 |
ttaccttagctccttctaaatcatcagagagacgaagaatttttgccactgaata |
193 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
2602861 |
ttaccttagctccttccaaatcatcagaaagacggagaatttttgctactgaata |
2602807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University