View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2737_low_4 (Length: 298)
Name: NF2737_low_4
Description: NF2737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2737_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 26784677 - 26784393
Alignment:
| Q |
1 |
tgaagctggtgggtggaaagataggaccacagttgaagatatggatctgtcagtacgtgcaagtctcgaaggatggaaattcttatacctctccaatata |
100 |
Q |
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| T |
26784677 |
tgaagctggtgggtggaaagataggaccacagttgaagatatggatctatcagtacgtgcaagtctcgaaggatggaaattcttatacctctccaatata |
26784578 |
T |
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| Q |
101 |
caggttccattttcttaattcaacctcaaaattagtcatatctctttacctggtattttaccaaattttaatgtgacaagagtgttacattacattggtc |
200 |
Q |
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| T |
26784577 |
caggttccatttacttaattcaatctcaaaattagtcatatctctttacctggtattttaccaaattttaatgtgacaagagtgttaaattacattggtc |
26784478 |
T |
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| Q |
201 |
tcattttaacatagatggttttcttgctatatggtatgaatttgtctataggttaaaaatgaattgcctagtactttaaatgcct |
285 |
Q |
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| T |
26784477 |
tcattttaacatagatggttctcttgctatatggtatgaatttgtctataggttaaaaatgaattgcccagtactttaaatgcct |
26784393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 26831381 - 26831168
Alignment:
| Q |
1 |
tgaagctggtgggtggaaagataggaccacagttgaagatatggatctgtcagtacgtgcaagtctcgaaggatggaaattcttatacctctccaatata |
100 |
Q |
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| T |
26831381 |
tgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgccagtctcaaaggatggaaattcttatacctctccgatttg |
26831282 |
T |
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| Q |
101 |
caggttccattttcttaattcaacctcaaaattagtcatatctctttacctggtattttaccaaattttaatgtg---acaagagtgttacattacattg |
197 |
Q |
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| T |
26831281 |
caggttcgattttcttaattcattctcaaaattagtcttatctcttaa--tcacatgttaccaaaatttaatgtgagaagaagagtgttacattacattg |
26831184 |
T |
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| Q |
198 |
gtctcattttaacata |
213 |
Q |
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|| ||| |||||||| |
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| T |
26831183 |
gttccatattaacata |
26831168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26817710 - 26817621
Alignment:
| Q |
1 |
tgaagctggtgggtggaaagataggaccacagttgaagatatggatctgtcagtacgtgcaagtctcgaaggatggaaattcttatacct |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||| ||||||||||||||||||||||| |
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| T |
26817710 |
tgaagctggtgggtggaaagataggaccacagttgaagatatggacctggctgtacgtgctagtctggaaggatggaaattcttatacct |
26817621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 26791003 - 26790885
Alignment:
| Q |
1 |
tgaagctggtgggtggaaagataggaccacagttgaagatatggatctgtcagtacgtgcaagtctcgaaggatggaaattcttatacctctccaatata |
100 |
Q |
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|||||| ||||| ||||||||||| ||||| || ||||| |||||| || | |||||||| |||||| |||||||||||||| |||| ||||||||| || |
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| T |
26791003 |
tgaagcgggtggatggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagtctcaaaggatggaaattcctatatctctccaattta |
26790904 |
T |
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| Q |
101 |
caggttccattttcttaat |
119 |
Q |
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||||||||||||||||||| |
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| T |
26790903 |
caggttccattttcttaat |
26790885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 26831170 - 26831112
Alignment:
| Q |
229 |
atatggtatgaatttgtctataggttaaaaatgaattgcctagtactttaaatgccttt |
287 |
Q |
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||||||| |||||| |||||||||||||||| |||||||| ||||| ||||| |||||| |
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| T |
26831170 |
atatggtgtgaattggtctataggttaaaaacgaattgccaagtacattaaaagccttt |
26831112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 41919753 - 41919793
Alignment:
| Q |
5 |
gctggtgggtggaaagataggaccacagttgaagatatgga |
45 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||| |
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| T |
41919753 |
gctggtggatggaaggataggaccacagttgaagatatgga |
41919793 |
T |
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