View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2738_high_1 (Length: 646)

Name: NF2738_high_1
Description: NF2738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2738_high_1
NF2738_high_1
[»] chr1 (12 HSPs)
chr1 (18-453)||(7495153-7495588)
chr1 (430-642)||(7488081-7488294)
chr1 (37-302)||(7873375-7873653)
chr1 (195-572)||(7474982-7475354)
chr1 (37-142)||(7487697-7487802)
chr1 (253-378)||(6944002-6944130)
chr1 (585-644)||(7475400-7475459)
chr1 (252-294)||(13877808-13877850)
chr1 (259-291)||(669249-669281)
chr1 (430-482)||(6943898-6943950)
chr1 (95-147)||(7474875-7474927)
chr1 (94-126)||(13877656-13877688)
[»] chr4 (2 HSPs)
chr4 (253-292)||(31103692-31103731)
chr4 (254-292)||(31097139-31097177)


Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 7495153 - 7495588
Alignment:
Q  18 caatgttatacatttttctccatccactttgatccattacccaaatgtgcaagacgaaaggagcattgacgtgattctgcacaacataagcaagggaacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7495153 caatgttatacatttttctccatccactttgatccattacccaaatgtgcaagacgacaggagcattgacgtgattctgcacaacataagcaagggaacc 7495252  T
Q  118 cttgatctcggcaacattatcccattgaaaactgcgagagaagattggccctctgagcgtgtgaaacttgttgctgtgaaagtcaaaacatagaatattt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7495253 cttgatctcggcaacattatcccattgaaaactgcgagagaagattggccctctgagcgtgtgaaacttgttgctgtgaaagtcaaaacatagaatattt 7495352  T
Q  218 gcagcataatcattgggattgtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcatgatga 317  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7495353 gcagcataatcattgggatagtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcgtgatga 7495452  T
Q  318 tagttaaaggatgaggatgttgagtaggggtacataatttagtacttagattataaacttctgcgaaggaaatataatgtttcgttgtcacagagcaata 417  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  7495453 tagttaaaggatgaggatgttgagtaggggtccataatttagtacttagattataaacttccgcgaaggaaatataatgtttcattgtcacagagcaata 7495552  T
Q  418 attgatatgaaatttcacagctttgaagttgatgtt 453  Q
    ||||||||||||||||||||||||||||||||||||    
T  7495553 attgatatgaaatttcacagctttgaagttgatgtt 7495588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 430 - 642
Target Start/End: Original strand, 7488081 - 7488294
Alignment:
Q  430 tttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccatacatgcgtgagtcgttgtcaaggcagagactcggaggaacacggtggacc 529  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  7488081 tttcacaactttgaagttgatgttgttgggatcatcggcaccgaaaccatacatgcatgagtcgttatcaaggcagagactcggaggaacacggtggacc 7488180  T
Q  530 tctctag-ggttgggttccacataattaactcatcgagacaacttttatggaaccgacacaaacgtttaagacagaaaacaccgttgcaactaccatagg 628  Q
    |||||||  || ||||||||||||||||||||||| |||||||| ||||| |||| |||||||| ||  ||||||||||| || |||||||||||||| |    
T  7488181 tctctagttgtagggttccacataattaactcatcaagacaactcttatgaaaccaacacaaaccttggagacagaaaacgccattgcaactaccatatg 7488280  T
Q  629 attctattcttata 642  Q
    |||| |||||||||    
T  7488281 attccattcttata 7488294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 37 - 302
Target Start/End: Complemental strand, 7873653 - 7873375
Alignment:
Q  37 ccatccactttgatccattacccaaatgtgcaagacgaaaggagcattgacgtgattctgcacaacataagcaagggaacccttgatctcggcaacatta 136  Q
    ||||||||||||||||||||||||||||| | | |||| ||||| || || ||||| ||||||||||||||||||||||||||| ||||||||||||| |    
T  7873653 ccatccactttgatccattacccaaatgttcgaaacgacaggagaatcgaagtgatgctgcacaacataagcaagggaacccttaatctcggcaacatca 7873554  T
Q  137 tcccattgaaaactgcg---------agagaagattggccctctgagcgtgtgaaacttgttgctgtgaaagtcaaa----acatagaatatttgcagca 223  Q
    || | | ||||  ||||          |||||| |||||||||||||   |||||||| |||| || ||||||||||    | |||||||||| |||  |    
T  7873553 tcgcgtagaaatttgcggtcttcaactgagaaggttggccctctgagttcgtgaaactggttgttgcgaaagtcaaagcatatatagaatattcgcaaaa 7873454  T
Q  224 taatcattgggattgtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggac 302  Q
      |||||||  || |||   || ||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||    
T  7873453 ccatcattgctatagtagagtgaattgtctgtaatccaatgataaacgccgttaacaagagtgttatatctagaaggac 7873375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 195 - 572
Target Start/End: Original strand, 7474982 - 7475354
Alignment:
Q  195 gaaagtcaaaacatagaatatttgcagcataatcattgggattgtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtattt 294  Q
    |||||| ||| ||||| ||||||||| ||| ||||||| ||| | |  ||| ||| | |||||||||||||||||  || ||||||||| |||| |||||    
T  7474982 gaaagttaaagcataggatatttgcaacatcatcattgcgatagaagaatgcattgtttgtaatccaatgataaatgccgttaacaagattgttatattt 7475081  T
Q  295 agaaggacgttgacgcatgatgatagttaaaggatgaggatgttgagtaggggtacataatttagtacttagattataaacttctgcgaaggaaatataa 394  Q
     || |||  ||  ||  |||||||||| |||||| ||| |||| | ||||| || ||| ||||||||| |||| |||||||||| ||  | |||||||||    
T  7475082 ggagggaatttttcgtgtgatgatagtaaaaggaggagcatgtagggtaggagtccatgatttagtacctagactataaacttccgcccatgaaatataa 7475181  T
Q  395 tgtttcgttgtcacagagcaataattgatatgaaatttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccatacatgcgtgagtcgt 494  Q
    |||||| || ||     | |||| |||| ||| | ||||||| ||||||| |  ||| ||||||||||||| ||||| |||||||||||   ||| | |     
T  7475182 tgtttc-ttctc-----gtaatacttgacatggagtttcacaactttgaaatcaatgatgtttggatcatctgcaccaaaaccatacatagatgatttgg 7475275  T
Q  495 tgtcaaggcagagactcggaggaacacggtggacctctctag-ggttgggttccacataattaactcatcgagacaact 572  Q
    | || ||||||  | | || |||| ||| |||||||||||||  ||||||||||| |||||||||||||| ||||||||    
T  7475276 tatcgaggcagctagtagggggaatacgatggacctctctagttgttgggttccaaataattaactcatctagacaact 7475354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 7487697 - 7487802
Alignment:
Q  37 ccatccactttgatccattacccaaatgtgcaagacgaaaggagcattgacgtgattctgcacaacataagcaagggaacccttgatctcggcaacatta 136  Q
    |||||||||||||||||| |||||||||  |||||| |  |||||||||| || |   ||||||||||||||||||||||| |||||||||||||||  |    
T  7487697 ccatccactttgatccatcacccaaatgctcaagacaacgggagcattgaagttacaatgcacaacataagcaagggaacctttgatctcggcaacacca 7487796  T
Q  137 tcccat 142  Q
    ||||||    
T  7487797 tcccat 7487802  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 253 - 378
Target Start/End: Complemental strand, 6944130 - 6944002
Alignment:
Q  253 tgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcatgatgatagttaa---aggatgaggatgttgagtaggggta 349  Q
    |||||||||||||||||| || |||||||||||||| |||||  | |||| ||||||  |||||||||| ||   |||| |||||||| | ||||||||     
T  6944130 tgtaatccaatgataaacgccgttaacaagagtgttatatttgaagggacattgacgtgtgatgatagtaaaaggaggaggaggatgtcgggtaggggtc 6944031  T
Q  350 cataatttagtacttagattataaacttc 378  Q
    ||| |||||||  ||||| ||||||||||    
T  6944030 catgatttagtgattagactataaacttc 6944002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 585 - 644
Target Start/End: Original strand, 7475400 - 7475459
Alignment:
Q  585 acacaaacgtttaagacagaaaacaccgttgcaactaccataggattctattcttatagg 644  Q
    |||||||| ||| |||||||||||||| ||| |||||||||| ||||| ||| |||||||    
T  7475400 acacaaacctttgagacagaaaacaccattgaaactaccatatgattcaattgttatagg 7475459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 13877808 - 13877850
Alignment:
Q  252 ctgtaatccaatgataaacaccattaacaagagtgttgtattt 294  Q
    ||||||||||||||||||  |||||||||||| ||||||||||    
T  13877808 ctgtaatccaatgataaatgccattaacaagaatgttgtattt 13877850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 669281 - 669249
Alignment:
Q  259 ccaatgataaacaccattaacaagagtgttgta 291  Q
    ||||||||||||||||||||||||||| |||||    
T  669281 ccaatgataaacaccattaacaagagtattgta 669249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 6943950 - 6943898
Alignment:
Q  430 tttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccataca 482  Q
    ||||||| ||||||| | |||| |||| | |||||||||||||||||||||||    
T  6943950 tttcacaactttgaaatcgatgatgttggaatcatcagcaccgaaaccataca 6943898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 7474875 - 7474927
Alignment:
Q  95 tgcacaacataagcaagggaacccttgatctcggcaacattatcccattgaaa 147  Q
    ||||||||||||| |||||| || |||||||||||||| | ||||||| ||||    
T  7474875 tgcacaacataagaaagggagcctttgatctcggcaacgtcatcccatagaaa 7474927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 13877656 - 13877688
Alignment:
Q  94 ctgcacaacataagcaagggaacccttgatctc 126  Q
    |||||||||||||||||||||||| ||||||||    
T  13877656 ctgcacaacataagcaagggaaccgttgatctc 13877688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Original strand, 31103692 - 31103731
Alignment:
Q  253 tgtaatccaatgataaacaccattaacaagagtgttgtat 292  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  31103692 tgtaatccaataataaacaccgttaacaagagtgttgtat 31103731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 31097139 - 31097177
Alignment:
Q  254 gtaatccaatgataaacaccattaacaagagtgttgtat 292  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  31097139 gtaatccaatgataaacaccgttagcaagagtgttgtat 31097177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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