View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2738_high_3 (Length: 427)

Name: NF2738_high_3
Description: NF2738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2738_high_3
NF2738_high_3
[»] chr2 (3 HSPs)
chr2 (1-215)||(10178843-10179054)
chr2 (11-142)||(26330635-26330768)
chr2 (96-142)||(23688911-23688959)
[»] chr3 (2 HSPs)
chr3 (279-411)||(8032247-8032369)
chr3 (63-144)||(2519000-2519083)
[»] scaffold0438 (1 HSPs)
scaffold0438 (310-411)||(6351-6452)
[»] chr8 (3 HSPs)
chr8 (310-411)||(26291969-26292070)
chr8 (310-411)||(26305226-26305327)
chr8 (310-411)||(26338581-26338682)
[»] chr5 (1 HSPs)
chr5 (310-411)||(33957502-33957603)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 10178843 - 10179054
Alignment:
Q  1 gttttaggacataagccagagattacttagggcgcaagttacatcttgtaaaattgaatttcatgtacatttcagtttcatttagactgcattaggtttg 100  Q
    ||||||| | ||||||||||||| ||||||||| ||||||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||| ||    
T  10178843 gttttagaagataagccagagatgacttagggcacaagttacatcttgtgaatttgaatttcatgtaaatttcagtttcatttagattgcattaggtatg 10178942  T
Q  101 ttacaagttagttatgctgaggtgtc--ttctagcttgtatatatattagccataatctataacagaattgatcaatttaatgataatcactttttctca 198  Q
    |||| |||||||||||| ||||||||  ||||||||||||||||    ||||||||||| |||  ||||| ||  ||| ||  |||||||| ||||||||    
T  10178943 ttactagttagttatgccgaggtgtcatttctagcttgtatata----agccataatctttaaatgaattcattcattcaacaataatcac-ttttctca 10179037  T
Q  199 gttttagcttttcatgg 215  Q
    | ||||||| |||||||    
T  10179038 gctttagctattcatgg 10179054  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 26330635 - 26330768
Alignment:
Q  11 ataagccagagattacttagggcgcaagttacatcttgtaaaattgaatttcatgtacatttcagtttcatttagactgcattaggtttgttacaagtta 110  Q
    ||||||||||| |||||||| | ||||| |||||||||||||  |||||||  ||| |||||  |||||||||||  || ||||||||||||||||||||    
T  26330635 ataagccagaggttacttagcgtgcaagctacatcttgtaaatgtgaatttagtgtgcatttgtgtttcatttagcttgtattaggtttgttacaagtta 26330734  T
Q  111 gttatgctgaggtgt--cttctagcttgtatata 142  Q
    |||||||| ||||||  |||||||||||||||||    
T  26330735 gttatgcttaggtgtcacttctagcttgtatata 26330768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 23688959 - 23688911
Alignment:
Q  96 gtttgttacaagttagttatgctgaggtgtc--ttctagcttgtatata 142  Q
    ||||||||||||||||||| | |||||||||  ||||||||||||||||    
T  23688959 gtttgttacaagttagttacgatgaggtgtcatttctagcttgtatata 23688911  T

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Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 279 - 411
Target Start/End: Original strand, 8032247 - 8032369
Alignment:
Q  279 gttgttggaagcacctgtaagaacacctgaactgaagtcaacctttgcagaaggtgagttttgaagcataaagtctatgacaggcaacaatgaaggatgt 378  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||          ||||| |||||||||||||||||||||||    
T  8032247 gttgttggaagcacatgtaagaacacctgaagtgaagtcaacctttgcagaaggtgagttt----------agtctttgacaggcaacaatgaaggatgt 8032336  T
Q  379 acgaaccggtttaatttcagtgacttcaagtta 411  Q
    |||||||||||||||||||||||||||||||||    
T  8032337 acgaaccggtttaatttcagtgacttcaagtta 8032369  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 2519083 - 2519000
Alignment:
Q  63 atgtacatttcagtttcatttagactgcattaggtttgttacaagttagttatgctgaggtgtc--ttctagcttgtatatata 144  Q
    ||||| ||||||||| |||||||| | ||||  ||| |||| |||||||||||| |||||||||  |||||||||| |||||||    
T  2519083 atgtaaatttcagttgcatttagattacatttagttagttataagttagttatgatgaggtgtcatttctagcttgcatatata 2519000  T

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Target: scaffold0438 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 6452 - 6351
Alignment:
Q  310 ctgaagtcaacctttgcagaaggtgagttttgaagcataaagtctatgacaggcaacaatgaaggatgtacgaaccggtttaatttcagtgacttcaagt 409  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||| |||| ||| || | | || |||||||||||||||||||    
T  6452 ctgaagtcaacctttgcagaaggtgagttttgaagcaaaaagtcaatgacagtcaccaatggaggacgtatgatctgattaaatttcagtgacttcaagt 6353  T
Q  410 ta 411  Q
    ||    
T  6352 ta 6351  T

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Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 26292070 - 26291969
Alignment:
Q  310 ctgaagtcaacctttgcagaaggtgagttttgaagcataaagtctatgacaggcaacaatgaaggatgtacgaaccggtttaatttcagtgacttcaagt 409  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||| |||| ||| || | | || |||||||||||||||||||    
T  26292070 ctgaagtcaacctttgcagaaggtgagttttgaagcaaaaagtcaatgacagtcaccaatggaggacgtatgatctgattaaatttcagtgacttcaagt 26291971  T
Q  410 ta 411  Q
    ||    
T  26291970 ta 26291969  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 26305327 - 26305226
Alignment:
Q  310 ctgaagtcaacctttgcagaaggtgagttttgaagcataaagtctatgacaggcaacaatgaaggatgtacgaaccggtttaatttcagtgacttcaagt 409  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||| |||| ||| || | | || |||||||||||||||||||    
T  26305327 ctgaagtcaacctttgcagaaggtgagttttgaagcaaaaagtcaatgacagtcaccaatggaggacgtatgatctgattaaatttcagtgacttcaagt 26305228  T
Q  410 ta 411  Q
    ||    
T  26305227 ta 26305226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 26338682 - 26338581
Alignment:
Q  310 ctgaagtcaacctttgcagaaggtgagttttgaagcataaagtctatgacaggcaacaatgaaggatgtacgaaccggtttaatttcagtgacttcaagt 409  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||||| |||| ||| || | | || |||||||||||||||||||    
T  26338682 ctgaagtcaacctttgcagaaggtgagttttgaagcaaaaagtcaatgacagtcaccaatggaggacgtatgatctgattaaatttcagtgacttcaagt 26338583  T
Q  410 ta 411  Q
    ||    
T  26338582 ta 26338581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 411
Target Start/End: Original strand, 33957502 - 33957603
Alignment:
Q  310 ctgaagtcaacctttgcagaaggtgagttttgaagcataaagtctatgacaggcaacaatgaaggatgtacgaaccggtttaatttcagtgacttcaagt 409  Q
    ||||||||||||||||| ||||||||||||||||||| ||| || ||| |||||| ||||| |||| ||  | || | || ||||||||| |||||||||    
T  33957502 ctgaagtcaacctttgccgaaggtgagttttgaagcaaaaattccatggcaggcaccaatggaggacgtctggactgattaaatttcagtaacttcaagt 33957601  T
Q  410 ta 411  Q
    ||    
T  33957602 ta 33957603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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