View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2738_high_4 (Length: 420)
Name: NF2738_high_4
Description: NF2738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2738_high_4 |
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| [»] scaffold0317 (1 HSPs) |
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| [»] scaffold1660 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0317 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 34 - 420
Target Start/End: Complemental strand, 20402 - 20018
Alignment:
| Q |
34 |
accgggtttgattaggaaggttgggcttggcccaattctctgtagttcagggggtgtaagcccaaggcgtcagtgtaaatagcaatatgtccaaattcaa |
133 |
Q |
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| T |
20402 |
accgggtttgattaggaaggttgggcttggcccaattcgctgtagttcagggggtgtaagcctaagacgtcagtgtaaatagcaatatgtccaaattcaa |
20303 |
T |
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| Q |
134 |
actcaaacttaagactttatttaattttcaaaatacctacaccctcaaatgtatctccaaaaatggatttgcaagaaattgaaccgggtatcatatgcca |
233 |
Q |
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| T |
20302 |
actcaaacggaagactttatttaattttcaaaatacctacaccctcaaatgtatctccaaaaatggatttgcaagaaattgaaccaggtaccatatgtca |
20203 |
T |
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| Q |
234 |
tcacttcataacttttaccactaagccataaccattttagttgaaatattcttacttctaaaatagatatgtaagggccnnnnnnncaagccactaacac |
333 |
Q |
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| T |
20202 |
tcacttcataacttttaccactaagtcacaaccattttagttgaaatattcttacttctaaaatagatatgtaa-gaccttttttctaagccactaacac |
20104 |
T |
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| Q |
334 |
attggcggttccttagcaggtacnnnnnnnnnatttgcaattcccttattttatttttcccgttactacatagcagttccttttctt |
420 |
Q |
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| T |
20103 |
attggctgttccttagcagttac-tttttattattggcaattcctttattttatttttcccgttactacgtagcagttccttttctt |
20018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1660 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold1660
Description:
Target: scaffold1660; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 1396 - 1506
Alignment:
| Q |
18 |
gaatgaaaggagagaaaccgggtttgattaggaaggttgggcttggcccaattctctgtagttcagggggtgtaagcccaaggcgtcagtgtaaatagca |
117 |
Q |
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| T |
1396 |
gaatgaaaggagagaaaccgggtttgattaggaaggttgggcttggcccaattcgctgtagttcagggggtgtaagcctaagacgtcagtgtaaatagca |
1495 |
T |
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| Q |
118 |
atatgtccaaa |
128 |
Q |
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| T |
1496 |
atatgtccaaa |
1506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 225 - 420
Target Start/End: Complemental strand, 91464 - 91265
Alignment:
| Q |
225 |
catatgccatcacttcataacttttaccactaagccataaccattttagttgaaatattcttacttctaaaatagatatgtaagggc----cnnnnnnnc |
320 |
Q |
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| T |
91464 |
catatgccatcacttcataacttttaccactaagtcacaaccattttagttgaaatattcttacttttaaaatagatatgtaaggccttttttttttttt |
91365 |
T |
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| Q |
321 |
aagccactaacacattggcggttccttagcaggtacnnnnnnnnnatttgcaattcccttattttatttttcccgttactacatagcagttccttttctt |
420 |
Q |
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| T |
91364 |
aagccactaacacattggcggttccttagcagttacttttttattattggcaattcttttattttatttttcaagttactacatagcagttccttttctt |
91265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Complemental strand, 34355539 - 34355493
Alignment:
| Q |
374 |
ttcccttattttatttttcccgttactacatagcagttccttttctt |
420 |
Q |
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| T |
34355539 |
ttcctttattttatttttccagttactacatagcagtttcttttctt |
34355493 |
T |
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