View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2738_high_5 (Length: 386)
Name: NF2738_high_5
Description: NF2738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2738_high_5 |
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| [»] scaffold0091 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 150 - 373
Target Start/End: Complemental strand, 3522267 - 3522044
Alignment:
| Q |
150 |
tgttagttttatttttcctcttttatttacgtttgtccaaatgcaggtaatgatggtatctaaaggcaaggcaaatccaggtctacttaataagattctc |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522267 |
tgttagttttatttttcctcttttatttacgtttctccaaatgcaggtaatgaaggtatctaaaggcaaggcaaatccaggtctacttaataagattctc |
3522168 |
T |
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| Q |
250 |
ttggagaaattgaattcgaaaagccgatgttaatagatttctatatgcacgccttcaatctgaattgtcggtgctacatagttactcatgcgcttaacat |
349 |
Q |
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|||||||||| ||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3522167 |
ttggagaaatcgaattcgaaaagctgatgttaatagattgctatgtgcacgccttcaatctgaattgtcggtgctacatagttactcatgcgcttaacat |
3522068 |
T |
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| Q |
350 |
acaagcgttgatcatgataaaatt |
373 |
Q |
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||||| |||||||||||||||||| |
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| T |
3522067 |
acaagtgttgatcatgataaaatt |
3522044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 23047750 - 23047420
Alignment:
| Q |
11 |
cagaacctgtggaaattgaaaaaatggtggacaaagtgattgcagataatccgaaacaggttgagcaataccgaggaggcaaaacgaaactccaaggnnn |
110 |
Q |
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|||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
23047750 |
cagatcctgttgaaattgaaaaaatggtggacaaagcgatcgcagataatccgaaacaggtcgagcaataccgaggaggcaaaactaaactccaaggttt |
23047651 |
T |
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| Q |
111 |
nnnngcaggtcaggtatga-cttttagagctggaaacaattgttagtt-ttatttttcctcttttattt--------------acgtttgtccaaatgca |
194 |
Q |
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| T |
23047650 |
ttttgctggccaggtatgaacttgtagagctggaaacagttgttatatattattttcccccttttattgtcacggtctcgttaacatttgtccaaatgca |
23047551 |
T |
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| Q |
195 |
ggtaatgatggtatctaaaggcaaggcaaatccaggtctacttaataagattctcttggagaaattgaattcgaaaagccgatgttaatagatttctata |
294 |
Q |
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| T |
23047550 |
ggtaatgaaggcatctaaaggcaaggcaaacccaggtctacttaacaagattctcttggagaaattgaattcataaagctgatgttaatagactgttata |
23047451 |
T |
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| Q |
295 |
tgcacgccttcaatctgaattgtcggtgcta |
325 |
Q |
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| T |
23047450 |
tgcacacttacaatctgaaatgtcagtgcta |
23047420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 33267918 - 33267954
Alignment:
| Q |
296 |
gcacgccttcaatctgaattgtcggtgctacatagtt |
332 |
Q |
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| T |
33267918 |
gcacgccttcaatctgaagtgtcggtgctacatagtt |
33267954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 332
Target Start/End: Original strand, 9571852 - 9571883
Alignment:
| Q |
301 |
ccttcaatctgaattgtcggtgctacatagtt |
332 |
Q |
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| T |
9571852 |
ccttcaatctgaattgtcggtgctacatagtt |
9571883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 5228235 - 5228267
Alignment:
| Q |
298 |
acgccttcaatctgaattgtcggtgctacatag |
330 |
Q |
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| T |
5228235 |
acgccttcaatctgaagtgtcggtgctacatag |
5228267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 23559747 - 23559779
Alignment:
| Q |
297 |
cacgccttcaatctgaattgtcggtgctacata |
329 |
Q |
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| T |
23559747 |
cacgccttcaatatgaattgtcggtgctacata |
23559779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 7652 - 7684
Alignment:
| Q |
298 |
acgccttcaatctgaattgtcggtgctacatag |
330 |
Q |
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| T |
7652 |
acgccttcaatctgaagtgtcggtgctacatag |
7684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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