View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2738_low_2 (Length: 487)

Name: NF2738_low_2
Description: NF2738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2738_low_2
NF2738_low_2
[»] chr8 (4 HSPs)
chr8 (17-245)||(9891529-9891757)
chr8 (241-380)||(9891792-9891921)
chr8 (17-133)||(17220164-17220280)
chr8 (407-465)||(9891982-9892040)
[»] chr4 (11 HSPs)
chr4 (17-223)||(3671048-3671254)
chr4 (270-487)||(3670763-3670982)
chr4 (17-190)||(54860810-54860983)
chr4 (53-216)||(52982885-52983048)
chr4 (17-205)||(55657369-55657557)
chr4 (17-216)||(55619009-55619207)
chr4 (17-216)||(55626313-55626511)
chr4 (17-197)||(54630335-54630515)
chr4 (17-184)||(55663621-55663788)
chr4 (51-207)||(55637265-55637421)
chr4 (93-204)||(50189997-50190108)
[»] chr2 (1 HSPs)
chr2 (20-233)||(13403641-13403854)
[»] chr1 (1 HSPs)
chr1 (97-222)||(37308569-37308694)
[»] chr7 (1 HSPs)
chr7 (97-182)||(46153223-46153308)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 9891529 - 9891757
Alignment:
Q  17 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 116  Q
    ||||||||||||| | |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  9891529 aggttggagaagcggggaaaaaccccggttacacaggagatgtcaacttgtatgctctgatgatagaggacgctgagggattggaaaagattgaaaactt 9891628  T
Q  117 gcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 216  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  9891629 gcagagtcatgacaactatgaaatttatgggaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgccatctccaggcaatggt 9891728  T
Q  217 tctcaacctggttttaactttagaagcag 245  Q
    |||||||||||||||||||||||| ||||    
T  9891729 tctcaacctggttttaactttagaggcag 9891757  T

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Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 241 - 380
Target Start/End: Original strand, 9891792 - 9891921
Alignment:
Q  241 agcagaatgtgaccattgttgcaaggaaccaaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttat 340  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  9891792 agcagaatgtgaccattgttgcaaggaacg---------tgacgagtggtttctttgatgc-agcttggattctatcctttattaagttgtagtttttat 9891881  T
Q  341 tggtaactagtgtgtaagatgggcattctcgtgcctgtct 380  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  9891882 tggtaactagtgtgtaagatggccattctcgtgcctgtct 9891921  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 17220164 - 17220280
Alignment:
Q  17 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 116  Q
    ||||||||||||| ||||||| |   ||| ||| |||||||||||||| ||||||||  |||||||| || || | |||||||||||||||||| ||| |    
T  17220164 aggttggagaagcggagaaaagctttggtaacacgggagatgtcaacttgtatgctcaaatgatagaagatgctgagggattggaaaagattgataacat 17220263  T
Q  117 gcagagtcatgacaact 133  Q
    ||||| |||||||||||    
T  17220264 gcagaatcatgacaact 17220280  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 465
Target Start/End: Complemental strand, 9892040 - 9891982
Alignment:
Q  407 ttttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaatt 465  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||    
T  9892040 ttttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaatt 9891982  T

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Target: chr4 (Bit Score: 175; Significance: 5e-94; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 3671254 - 3671048
Alignment:
Q  17 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 116  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  3671254 aggttggagaagcggagaaaaaccccggttacacgggagatgtcaacttgtatgctctgatgataggggacgcggagggattggaaaagattggaaactt 3671155  T
Q  117 gcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 216  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671154 gcagagtcatgacaactatgaaatttatgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 3671055  T
Q  217 tctcaac 223  Q
    |||||||    
T  3671054 tctcaac 3671048  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 270 - 487
Target Start/End: Complemental strand, 3670982 - 3670763
Alignment:
Q  270 caaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattggtaactagtgtgtaagatgggcattct 369  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  3670982 caaggaactgtgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattgacaactagtgtgtaagatgggcattct 3670883  T
Q  370 cgtgcctg--tctttgttttcnnnnnnnaataaaatacattttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaattat 467  Q
    ||||||||  | ||| ||||        |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||    
T  3670882 cgtgcctgttttttttttttttttttttaataaaatacattttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaattat 3670783  T
Q  468 acaatgaatattttatattc 487  Q
     ||||| |||||||||||||    
T  3670782 gcaatggatattttatattc 3670763  T

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Target: chr4; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 54860983 - 54860810
Alignment:
Q  17 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 116  Q
    ||||||||||||  ||||||| |   ||| ||| |||||||||||||| |||||||| |||||||||||| || | |||||||||||||||||| ||| |    
T  54860983 aggttggagaagtggagaaaagctttggtaacacgggagatgtcaacttgtatgctcagatgatagaggatgctgagggattggaaaagattgataacat 54860884  T
Q  117 gcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaag 190  Q
    ||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  54860883 gcagaatcatgacaactatgaaatttatgagaaggctgttaaaattcttgagacatattggttggaagatgaag 54860810  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 52983048 - 52982885
Alignment:
Q  53 gagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggc 152  Q
    |||||||||| | |||||||| |||||||||||| || | ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||| ||    
T  52983048 gagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattgaaaacttgcagagtcatgacaacaatgaaatttatgagaatgc 52982949  T
Q  153 tgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 216  Q
    ||| | |||||| ||||||||||||||||||||||||| |||||| ||||||||| || |||||    
T  52982948 tgttagaattctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt 52982885  T

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Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 55657557 - 55657369
Alignment:
Q  17 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 116  Q
    ||||||||||||| ||||||| |    || ||| |||||||||||||| |||||||| ||||||||| || |  | ||||||||||||||| ||||||||    
T  55657557 aggttggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagatcgaaaactt 55657458  T
Q  117 gcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctc 205  Q
    ||||||||||||||||  |||||||| |||||||||||| |||||||||||||||||||||||||||||||  | |||||| |||||||    
T  55657457 gcagagtcatgacaacaatgaaatttatgagaaggctgttaaaattcttgagacatattggttggaagatgttgatgagacactacctc 55657369  T

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Target: chr4; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 55619207 - 55619009
Alignment:
Q  17 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 116  Q
    ||||||||||||| ||||||| |    || ||| |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||    
T  55619207 aggttggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaactt 55619109  T
Q  117 gcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 216  Q
    ||||||||||||||||   ||||||| |||||||||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55619108 gcagagtcatgacaacaaagaaatttatgagaaggctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55619009  T

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Target: chr4; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 55626511 - 55626313
Alignment:
Q  17 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 116  Q
    ||||||||||||| ||||||| |    || ||| |||||||||||||| |||||||| ||||||||| || || | |||||||||||| || ||||||||    
T  55626511 aggttggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaa-atcgaaaactt 55626413  T
Q  117 gcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt 216  Q
    ||||||||||||||||   ||||||| |||||||||||| |||||||| |||||||||||||||||||||| || |||||| ||||||| |||| |||||    
T  55626412 gcagagtcatgacaacaaagaaatttatgagaaggctgttaaaattctcgagacatattggttggaagatgtagatgagacactacctctaggccatggt 55626313  T

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Target: chr4; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 54630335 - 54630515
Alignment:
Q  17 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 116  Q
    |||||||||||||||||||||     ||| ||| |||||||||||| | |||||||| |||||||||||| |    ||||||||||||||||||||||||    
T  54630335 aggttggagaagcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattgaaaactt 54630434  T
Q  117 gcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagac 197  Q
    | | ||||||||  || | ||||||| |||||||||||  |||||||| |||| |||||||||||||||||||| ||||||    
T  54630435 ggatagtcatgaagacagagaaatttatgagaaggctgctaaaattctcgagagatattggttggaagatgaagatgagac 54630515  T

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Target: chr4; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 55663788 - 55663621
Alignment:
Q  17 aggttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaactt 116  Q
    ||||||||||||| |||||||||    || |||  ||||||||||||| |||||||| ||||||||| || |  | ||||||||||||||||||||||||    
T  55663788 aggttggagaagcggagaaaaacttttgtaacaccggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaagattgaaaactt 55663689  T
Q  117 gcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaag 184  Q
    |||||||||  || ||  |||||||| |||||||||||| | |||  | |||||||||||||||||||    
T  55663688 gcagagtcacaaccacattgaaatttatgagaaggctgttagaatcgtcgagacatattggttggaag 55663621  T

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Target: chr4; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 51 - 207
Target Start/End: Original strand, 55637265 - 55637421
Alignment:
Q  51 gggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaag 150  Q
    |||||||||||||| ||||| || |||||||   ||||| |  || | || | |||||||||||||||||||||||||||||  ||||||| ||||||||    
T  55637265 gggagatgtcaacttgtatgttcagatgatacctgacgctgacggttgggtagagattgaaaacttgcagagtcatgacaacaatgaaattcgtgagaag 55637364  T
Q  151 gctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctcca 207  Q
    ||||| ||||||||||| |||||||||||  |||||||||  |||||  ||||||||    
T  55637365 gctgttaaaattcttgaaacatattggtttaaagatgaagacgagacagtacctcca 55637421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 50190108 - 50189997
Alignment:
Q  93 gggattggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggt 192  Q
    |||||| || ||||| |||||| |||| |||||||| |||   ||||| | |||||||||||| ||||||||||| |||||||||| | | ||||||| |    
T  50190108 gggatttgacaagatagaaaacctgcaaagtcatgataaccaagaaatatatgagaaggctgttaaaattcttgaaacatattggtcgaacgatgaagat 50190009  T
Q  193 gagacgctacct 204  Q
    |||| |||||||    
T  50190008 gagatgctacct 50189997  T

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Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 13403641 - 13403854
Alignment:
Q  20 ttggagaagcagagaaaaaccccggttacatgggagatgtcaactggtatgctctgatgatagaggacgcggggggattggaaaagattgaaaacttgca 119  Q
    |||||||||||||||||| |   ||| ||  |||||||||||||| |||||||| ||||||||| || |||| |||||||||||||||||| ||| ||||    
T  13403641 ttggagaagcagagaaaagctttggtaacgcgggagatgtcaacttgtatgctcagatgatagatgaggcggagggattggaaaagattgagaacctgca 13403740  T
Q  120 gagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgagacgctacctccaggcaatggttct 219  Q
    |||||||||||||  ||||||||  ||||||||||| |||||||| |||||||||||||||||||||||||  ||||| ||||| |||||| ||||||||    
T  13403741 gagtcatgacaacaatgaaatttacgagaaggctgttaaaattctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggttct 13403840  T
Q  220 caacctggttttaa 233  Q
    ||||||||||||||    
T  13403841 caacctggttttaa 13403854  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 37308694 - 37308569
Alignment:
Q  97 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttggaagatgaaggtgaga 196  Q
    ||||| || ||||| ||| | |||||||||||||||   || |||| ||| |||||||| || |||||||||||||| |||||||| || |||| |||||    
T  37308694 ttggagaaaattgagaacctccagagtcatgacaacacagagatttatgaaaaggctgtgaagattcttgagacatactggttggaggaagaagatgaga 37308595  T
Q  197 cgctacctccaggcaatggttctcaa 222  Q
    |  | ||||||||| ||| |||||||    
T  37308594 ccatgcctccaggcgatgcttctcaa 37308569  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 46153308 - 46153223
Alignment:
Q  97 ttggaaaagattgaaaacttgcagagtcatgacaactgtgaaatttgtgagaaggctgtcaaaattcttgagacatattggttgga 182  Q
    ||||| || ||||| ||| | |||||||||||||||  ||| |||| ||| |||||||| || ||||| |||||||| ||||||||    
T  46153308 ttggagaaaattgagaacctccagagtcatgacaacaatgagatttatgaaaaggctgtgaagattctcgagacatactggttgga 46153223  T

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