View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2738_low_7 (Length: 239)
Name: NF2738_low_7
Description: NF2738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2738_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 3670330 - 3670481
Alignment:
| Q |
1 |
tattctagcttagcaaattttacaaattcacttcatgattcaaagctaccaacttctgaaaatcaagaacattttcagctggaca---tgatgaattcta |
97 |
Q |
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| T |
3670330 |
tattctagcttagcaaattttacaaattcacttcatgattcaaagctaccaacttctgaaaatcaagaacattttcagctggacatgttgatgaattcta |
3670429 |
T |
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| Q |
98 |
aaagctttttggacagatcaattggttcaaataccaattctgaacaatacgc |
149 |
Q |
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| T |
3670430 |
gaagctttttggacagatcaattggttcaaataccaattctgaacaatacgc |
3670481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 3670517 - 3670603
Alignment:
| Q |
153 |
tgaagaacatttaatttggaattagaacgttactcgttagcttggatcctttgtagtcccccggtcggtgcataaaattttgaacca |
239 |
Q |
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| T |
3670517 |
tgaagaacatttaatttggaattagaacgttactcgtcagcttggatcctctgtagtcctccagttggtgcataaaatttcgaacca |
3670603 |
T |
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