View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_high_1 (Length: 841)
Name: NF2739_high_1
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 655; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 11 - 765
Target Start/End: Complemental strand, 27771844 - 27771087
Alignment:
| Q |
11 |
tccaagaaaatcgccgcgaaaattgtcaagtttcaacctttggtttagatgatgctcaaataaaatccattgcagtttttagctacaaaaaaggagatgc |
110 |
Q |
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| T |
27771844 |
tccaagaaaatcgccgcgaaaattgtcaagtttcaacctttggtttagatgatgctcaaataaaatccattgcagtttttagctacaaaaaaggagatgc |
27771745 |
T |
|
| Q |
111 |
nnnnnnnagtactactgtcacagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcat |
210 |
Q |
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| T |
27771744 |
tttttttagtactactgtcacagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcat |
27771645 |
T |
|
| Q |
211 |
cttccttgtattgatacatggcttaaatctaactctagttgtcctctatgtcgttctagcgtattcacttcgaatgcttcaatacacaatgttcaagttc |
310 |
Q |
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| T |
27771644 |
cttccttgtattgatacatggcttaaatctaactctagttgtcctctatgtcgttctagcgtattcacttcgaatgcttcaacacatcatgttcaagttc |
27771545 |
T |
|
| Q |
311 |
ccgcgacggttatagaacttccttcaagaactgaaactttttcagaaga---acaaatagttatggaagaagcaatgattcatcatagtagagttgattc |
407 |
Q |
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| | || ||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||| || |||||||||||||| || |
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| T |
27771544 |
cggttacaattatagaacttccttcaagaaatgaaacttttttagaagagcaacaaatagttgtggaagaagcaatgatgcaacatagtagagttgagtc |
27771445 |
T |
|
| Q |
408 |
aaaggcgccttcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgtgaatcgatcggaagg |
507 |
Q |
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| T |
27771444 |
gaaggcgccatcattgcgcgcttttagtgatttgtgtaatttgcaaggaagagaaagaataatcgaaattagagacgaagtttgtgaatcgatcggaagg |
27771345 |
T |
|
| Q |
508 |
tcagtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtgaagaaggatgttcaa |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27771344 |
tcagtgtctatggatcattcatttcaaaatggtttttcaattggtgatgtgttgaatatgaatgaagatgaagatgattcttgtgaagaaggatgttcaa |
27771245 |
T |
|
| Q |
608 |
tggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtccaattgcaatgaagag |
707 |
Q |
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| T |
27771244 |
tggatgttagttcatcaaagatatcacaaggagaaagtagtaaatcaaggtacaaaagaagagtgttgcattgtgttatgagtccaattgcaatgaagag |
27771145 |
T |
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| Q |
708 |
atcgttttctaatggaagattttcactaggtaaaattgatagaggaaaaaggcaagga |
765 |
Q |
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| T |
27771144 |
atcgttttctaatggaagattttcacttggtaaaattgatagaggaaaaaggcaagga |
27771087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 235
Target Start/End: Complemental strand, 37504182 - 37504077
Alignment:
| Q |
130 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
229 |
Q |
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||||| ||||| ||||||||| |||| |||||||| || || ||| | ||| |||| || | ||||| ||| | ||||||| | |||||||||||||| | |
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| T |
37504182 |
acagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtattgatactt |
37504083 |
T |
|
| Q |
230 |
ggctta |
235 |
Q |
| |
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|||||| |
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| T |
37504082 |
ggctta |
37504077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 130 - 264
Target Start/End: Complemental strand, 12617922 - 12617788
Alignment:
| Q |
130 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
229 |
Q |
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||||||||||| |||||||||| ||||||||||| ||||| ||| ||||||||||||| | |||| ||||| |||||||||||||||||||||||||| |
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| T |
12617922 |
acagattgttctgtttgtctaaacgagtttcaagacgatgagagtattagacttttacctaaatgtagccatgcttttcatcttccttgtattgatacat |
12617823 |
T |
|
| Q |
230 |
ggcttaaatctaactctagttgtcctctatgtcgt |
264 |
Q |
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|||| |||||| | |||| ||||||||| |||||| |
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| T |
12617822 |
ggctcaaatctcattctaattgtcctctttgtcgt |
12617788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 730
Target Start/End: Complemental strand, 12617343 - 12617286
Alignment:
| Q |
673 |
ttgcattgtgttatgagtccaattgcaatgaagagatcgttttctaatggaagatttt |
730 |
Q |
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||||||||||| | ||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
12617343 |
ttgcattgtgtgctaagtccaattgcaatgaagagatcattttcaagtggaagatttt |
12617286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 131 - 235
Target Start/End: Complemental strand, 37227965 - 37227861
Alignment:
| Q |
131 |
cagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacatg |
230 |
Q |
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|||||||||| |||||| | ||||||||| |||| ||||| | | |||||||||| |||| ||||||||||| ||||||| | |||||||||||||| || |
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| T |
37227965 |
cagattgttctgtttgtttgagtgagtttgaagaagatgagaatcttagacttttgccaaagtgtaaccatgcttttcatttaccttgtattgatacttg |
37227866 |
T |
|
| Q |
231 |
gctta |
235 |
Q |
| |
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||||| |
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| T |
37227865 |
gctta |
37227861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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