View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_high_10 (Length: 513)
Name: NF2739_high_10
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_10 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 4572770 - 4573281
Alignment:
| Q |
1 |
aatgtaaaatgtgtttactttatttaaaagatgtgttattcaatttcaagccaaattaaatgttaaaagagaaggaacaaaatcaagcaaaaccttatga |
100 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4572770 |
aatgtaaaatttgtttactttatttaaaagatgtgatattcaatttcaagccaaattaaatgttaaaagagaaggaacaaaatcaagcaaaaccttatga |
4572869 |
T |
|
| Q |
101 |
ctttacatatatgaaagttattgtgtaacatacctagtgaattgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaa |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4572870 |
ctttacatatatgaaagtcattgtgtaacatacctagtgaattgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaa |
4572969 |
T |
|
| Q |
201 |
tagtttatcaaaaacattaagcataagttaggacatgatagtcgnnnnnnngcatgataaatgaagaaaaatacaaaggaagggtaagtttatttacagg |
300 |
Q |
| |
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|| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4572970 |
taatttatcaaaa-cattaagcataagttaggacatgatagtcgaaaaaaagcatgataaatgaagaaaaatacaaaggaagggttagtttatttacagg |
4573068 |
T |
|
| Q |
301 |
attaagcaatgccttgtggggagaatcatccaaaagcaatgtgtttgattcattgtaatatcccttttcccaaggaagatttggatcatacttgtcccaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4573069 |
attaagcaatgccttgtggggagaatcatccaaaagcaatgtgtttgattcattgtaatatcccttttcccaaggaagatttggatcatacttgtcccaa |
4573168 |
T |
|
| Q |
401 |
attttccttagatccttacaaactagtggcttgcgcttgttctcaacagtttcgaaagctgtttcggtacaatgtgatagatcctgtcaaagaatatgta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
4573169 |
attttccttagatccttacaaactagtggcttgcgcttgttctcaacagtttggaaagctgtttcagtacaatgtgatatatcctgtcaaagaatatgta |
4573268 |
T |
|
| Q |
501 |
ggatgagattaat |
513 |
Q |
| |
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||||||||||||| |
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| T |
4573269 |
ggatgagattaat |
4573281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 124 - 509
Target Start/End: Original strand, 4600298 - 4600682
Alignment:
| Q |
124 |
tgtaacatacctagtgaattgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaatagtttatcaaaaacattaagca |
223 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
4600298 |
tgtaacatacctagtgaagtgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaataatttatcaaaa-cattaagca |
4600396 |
T |
|
| Q |
224 |
taagttaggacatgatagtcgnnnnnnngcatgataaatgaagaaaaatacaaaggaagggtaagtttatttacaggattaagcaatgccttgtggggag |
323 |
Q |
| |
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|||||||||||||||| || | |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||| |
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| T |
4600397 |
taagttaggacatgattgttgaaaaaaagcatgataaatgaagaaaaatacaaaggaagggttagttgatttacaggattaagcagtgccttgtagggag |
4600496 |
T |
|
| Q |
324 |
aatcatccaaaagcaatgtgtttgattcattgtaatatcccttttcccaaggaagatttggatcatacttgtcccaaattttccttagatccttacaaac |
423 |
Q |
| |
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|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||| |||| |
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| T |
4600497 |
aatcatccaacagcaatgtgtttgactcattgtaatatcccttctcccaaggaagattaggatcatacttgttccaaattttccttaaatccttaaaaac |
4600596 |
T |
|
| Q |
424 |
tagtggcttgcgcttgttctcaacagtttcgaaagctgtttcggtacaatgtgatagatcctgtcaaagaatatgtaggatgagat |
509 |
Q |
| |
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|||||||||| ||||||| | || ||||| ||||| |||||| ||||||||||| || | |||||||||||||||||| ||||||| |
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| T |
4600597 |
tagtggcttgtgcttgttttgaagagttttgaaagttgtttcagtacaatgtgacaggttctgtcaaagaatatgtagaatgagat |
4600682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 280 - 513
Target Start/End: Original strand, 4584275 - 4584508
Alignment:
| Q |
280 |
aagggtaagtttatttacaggattaagcaatgccttgtggggagaatcatccaaaagcaatgtgtttgattcattgtaatatcccttttcccaaggaaga |
379 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||| || |||||||||||| ||| |||||||||||| |
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| T |
4584275 |
aagggttagtttatttacaggattaaggaatgccttgtagggagaatcatccagcagcaacgtgttcgagtcattgtaatatttcttctcccaaggaaga |
4584374 |
T |
|
| Q |
380 |
tttggatcatacttgtcccaaattttccttagatccttacaaactagtggcttgcgcttgttctcaacagtttcgaaagctgtttcggtacaatgtgata |
479 |
Q |
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|| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | |
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| T |
4584375 |
ttcggatcatacttgtcccaaattttccttaaatccttaaaaactagtggcttgcgcttgttctcaagagttttgaaagctgtttcagtacaatgtgaca |
4584474 |
T |
|
| Q |
480 |
gatcctgtcaaagaatatgtaggatgagattaat |
513 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |
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| T |
4584475 |
aatcctgtcaaagaatatgtagaatgagattaat |
4584508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 288 - 513
Target Start/End: Original strand, 4592027 - 4592252
Alignment:
| Q |
288 |
gtttatttacaggattaagcaatgccttgtggggagaatcatccaaaagcaatgtgtttgattcattgtaatatcccttttcccaaggaagatttggatc |
387 |
Q |
| |
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|||||||||| |||||||||| ||||||| ||||||||||||| | |||||||| || ||||||||||||||| | |||||||||||||| ||||| |
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| T |
4592027 |
gtttatttactggattaagcagcgccttgtaaggagaatcatccagcaataatgtgttcgactcattgtaatatcccctctcccaaggaagattcggatc |
4592126 |
T |
|
| Q |
388 |
atacttgtcccaaattttccttagatccttacaaactagtggcttgcgcttgttctcaacagtttcgaaagctgtttcggtacaatgtgatagatcctgt |
487 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| || | ||||||| |
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| T |
4592127 |
atacttgtcccaaattttccttaaatccttaaaaactagtggcttgcgcttgttctcaagagttttgaaagctgtttcagtacaatgagacatatcctgt |
4592226 |
T |
|
| Q |
488 |
caaagaatatgtaggatgagattaat |
513 |
Q |
| |
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|||||||||||||| ||||||||||| |
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| T |
4592227 |
caaagaatatgtagaatgagattaat |
4592252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 287 - 440
Target Start/End: Original strand, 4605498 - 4605651
Alignment:
| Q |
287 |
agtttatttacaggattaagcaatgccttgtggggagaatcatccaaaagcaatgtgtttgattcattgtaatatcccttttcccaaggaagatttggat |
386 |
Q |
| |
|
|||||||||||||||||||| || |||||| |||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| |||| |
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| T |
4605498 |
agtttatttacaggattaagtaaccccttgtagggagagtcatccaaaagcaatgtatttgattcattgtagtaccccttctcccaaggaagattcggat |
4605597 |
T |
|
| Q |
387 |
catacttgtcccaaattttccttagatccttacaaactagtggcttgcgcttgt |
440 |
Q |
| |
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| ||||| ||||||||||| || ||||||||| | || | || ||||||||||| |
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| T |
4605598 |
cgtacttatcccaaatttttctcagatccttaaacaccactgtcttgcgcttgt |
4605651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 4591792 - 4591928
Alignment:
| Q |
69 |
gagaaggaacaa-aatcaagcaaaaccttatgactttaca--tatatgaaagttattgtgtaacatacctagtgaattgtcattctgattctcataactg |
165 |
Q |
| |
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||||||| |||| |||||||||||||||||||| |||||| |||||| | | ||| |||| |||||||| |||||||||||||||| ||||||||||| |
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| T |
4591792 |
gagaagggacaataatcaagcaaaaccttatgagtttacaaatatatgtagatcattttgtaccatacctaatgaattgtcattctgactctcataactg |
4591891 |
T |
|
| Q |
166 |
aatgtatgaggaaagattgagttgtatggctacaata |
202 |
Q |
| |
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|||||||| |||||||||||||||||||||| ||||| |
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| T |
4591892 |
aatgtatgcggaaagattgagttgtatggctgcaata |
4591928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 4584118 - 4584201
Alignment:
| Q |
128 |
acatacctagtgaattgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaatagtttatcaa |
211 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| || ||||| |
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|
| T |
4584118 |
acatacctaatgaattgtcattctgattctcataactgaatgtatgcggaaagattgagttgtgtggctgcaataattcatcaa |
4584201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 4605341 - 4605453
Alignment:
| Q |
124 |
tgtaacatacctagtgaattgtcattctgattctcataactgaatgtatgaggaaagattgagttgtatggctacaatagtttatcaaaaacattaagca |
223 |
Q |
| |
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|||| |||||||||||| ||||| |||| ||| |||| |||||| || |||||||||||||||||||||||||| | | |||| |||||||||| || |
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| T |
4605341 |
tgtaccatacctagtgatttgtccttctttttccgataagtgaatgagtgtggaaagattgagttgtatggctacaacaatgtatc-aaaacattaaaca |
4605439 |
T |
|
| Q |
224 |
taagttaggacatg |
237 |
Q |
| |
|
|||||||||||||| |
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|
| T |
4605440 |
taagttaggacatg |
4605453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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