View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_high_11 (Length: 487)
Name: NF2739_high_11
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 217 - 477
Target Start/End: Original strand, 39490265 - 39490525
Alignment:
| Q |
217 |
agttatttttcctttctaaaattaaaaacaaatggagacggagatgtacaagcgagatcaacctcaaaaccaaaagacacaatctagtacttatttgata |
316 |
Q |
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| T |
39490265 |
agttatttttcctttctaaaattaaaaacaaatggagaccgagatgtacaagcgagatcaacctcaaaaccaaaagacacaatctagtacttatttgata |
39490364 |
T |
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| Q |
317 |
tcgcaatgtgttttacaaaattatggggaagcatcctattcttgcaaaagttacaaattatgaactcaccatgatactataattttgtccaacttcgtaa |
416 |
Q |
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| T |
39490365 |
tcgcaatgtgttttacaaaattatggtgaaacatcctattcttgcaaaagttacaaattatgaactcaccatgatactataattttgtccaacttcgtaa |
39490464 |
T |
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| Q |
417 |
tatcaaatatacacttcaaatcgccaataacaacatatttaaattaaattactgctctgtg |
477 |
Q |
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| T |
39490465 |
tatcaaacatacacttcaaatcgccaataacaacatatttaaattaaattactgctctgtg |
39490525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 39490125 - 39490195
Alignment:
| Q |
76 |
aatacatcaaatagtcatcttaatttggcgtggtctgaaaataacacacgtaaaagaaatatagatttcac |
146 |
Q |
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| T |
39490125 |
aatacatcaaatagtcatcttaatttggcgtggtctgaaaataacacacgtaaaagaaatatagatttcac |
39490195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 39490053 - 39490114
Alignment:
| Q |
32 |
cctattaatatatcataattttactttcatttctaaaaagtgttaatacatcaaatagtcat |
93 |
Q |
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| T |
39490053 |
cctattaatatatcataattttaatttcatttctaaaaagtgttaatacatcaaatagtcat |
39490114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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