View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2739_high_12 (Length: 474)
Name: NF2739_high_12
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 460
Target Start/End: Complemental strand, 37478907 - 37478454
Alignment:
| Q |
12 |
caaaggcaaatagtgtaattgtaaatgcacttttttctaaaacaaatgtagccatagggttgggcataaaagaaaatggaaattacatgaggatgttgct |
111 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37478907 |
caaaggcaaatagtgtaattgtaaatgtacttttttctaaaacaaatgtagccatagggttgggcataaaagaaaatggaaattacatgaggatgttgct |
37478808 |
T |
|
| Q |
112 |
aaaatggactcatcttgtatcaaaatattatatttaaatagatagtcttcatgacttcatctagcaccattacatttttattgctccaatttccataact |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37478807 |
aaaatggactcatcttgtatcaaaatattatatttaaatagatagtcttcatgacttcatctagcaccattacatttttattgctccaatttccataact |
37478708 |
T |
|
| Q |
212 |
atgaggattgcataattaaaaataagaggattatttatcaaagttgaatggtgaccatgtttgatggctatgaatgaagtcaaatccacttaatcactgc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37478707 |
atgaggattgcataattaaaaataagaggattatttatcaaagttgaatggtgaccatgtttgatggctatgaatgaagtcaaatccacttaatcactgc |
37478608 |
T |
|
| Q |
312 |
acgaatgtgatgtgtggcaatcacacgacgccgtgagcctgccacatacaggcatgctcctaatcaccgatggccttgtgcatatttttagttcatgcac |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37478607 |
acgaatgtgatgtgtggcaatcacacgacgccgtgagcctgccacatacaggcatgctcctaatcactgatggccttgtgcatatttttagttcatgcac |
37478508 |
T |
|
| Q |
412 |
tctggtgcctcaatta-----gagttatattgaaccgttccaaaacatatatat |
460 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37478507 |
tctggtgcctcaattagagtagagttatattgaaccgttccaaaacatatatat |
37478454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University