View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_high_15 (Length: 433)
Name: NF2739_high_15
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 27639150 - 27638822
Alignment:
| Q |
1 |
ctataactatgaatttgtgtgcgcttattaccaatgaagaaaacgactaaaaatatatcataataagaagaagaa---aagactnnnnnnngtatattct |
97 |
Q |
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| T |
27639150 |
ctataactatgaattcgtgtgcgcttattaccaatgaagaaaacgactaaaaatatatcataataagaagaagaagaaaagactaaaaaaagtatattct |
27639051 |
T |
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| Q |
98 |
agactactattttttcgataataaataacatcttaaattgaattaattcatcccattttaaataaagaaacggacaaatccttgggagtgtattttattt |
197 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
27639050 |
agactactattttttcactaataaataacgtcttaaattgaattaattcatcccattttaaataaagaaacagacaaatctttgggagtgtattttattt |
27638951 |
T |
|
| Q |
198 |
ctctgatacgcaatgagtttgactcatacaaacacctttaaaatctatggtccgtttagccacaaattttgtatgggttacgttgttgcttacggcatcc |
297 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
27638950 |
ctctgatacgcaatgtgtttgactcatacaaacacctttaaaatctatggtccgtttaaccacaaattttgtatgggttacgttgttgcttaccgcatcc |
27638851 |
T |
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| Q |
298 |
cacgcccattttaatgctcagaggatagg |
326 |
Q |
| |
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| T |
27638850 |
cacgcccattttaatgctcagaggatagg |
27638822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 37355282 - 37354985
Alignment:
| Q |
27 |
attaccaatgaagaaaacgactaaaaatatatcataataagaagaagaaaagactnnnnnnn-gtatattctagactactattttttcgataataaataa |
125 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||| |||| ||| ||||||||| |
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| T |
37355282 |
attaccaatgaagaaaacgactaaaaatatatcataaaaagaagaataaaagactaaaaaaaagtatattctacactacttttttgtcgccaataaataa |
37355183 |
T |
|
| Q |
126 |
catcttaaattgaattaattcatcccattttaaataaagaaacggacaaatccttgggagtgtattttatttctctgatacgcaatgagt-ttgactcat |
224 |
Q |
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| ||||||||||||| ||||||||||||||||||| | |||| ||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
37355182 |
cgtcttaaattgaatccattcatcccattttaaatacaaaaacagacaaatttttgtgagtgtattttatttctctaatacgcaatgaaagttgactcat |
37355083 |
T |
|
| Q |
225 |
acaaacacctttaaaatctatggtccgtttagccacaaattttgtatgggttacgttgttgcttacggcatcccacgcccattttaatgctcagagga |
322 |
Q |
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| T |
37355082 |
acaaacacctttaaaatctacagtccgtttagccacaaattttgtatggggtacgttgttgcttaccgcatcgcacacccattttaatgctcaaagga |
37354985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 37367256 - 37366959
Alignment:
| Q |
27 |
attaccaatgaagaaaacgactaaaaatatatcataataagaagaagaaaagactnnnnnnn-gtatattctagactactattttttcgataataaataa |
125 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||| |||| ||| ||||||||| |
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| T |
37367256 |
attaccaatgaagaaaacgactaaaaatatatcataaaaagaagaataaaagactaaaaaaaagtatattctacactacttttttgtcgccaataaataa |
37367157 |
T |
|
| Q |
126 |
catcttaaattgaattaattcatcccattttaaataaagaaacggacaaatccttgggagtgtattttatttctctgatacgcaatgagt-ttgactcat |
224 |
Q |
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| ||||||||||||| ||||||||||||||||||| | |||| ||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
37367156 |
cgtcttaaattgaatccattcatcccattttaaatacaaaaacagacaaatttttgtgagtgtattttatttctctaatacgcaatgaaagttgactcat |
37367057 |
T |
|
| Q |
225 |
acaaacacctttaaaatctatggtccgtttagccacaaattttgtatgggttacgttgttgcttacggcatcccacgcccattttaatgctcagagga |
322 |
Q |
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| T |
37367056 |
acaaacacctttaaaatctacagtccgtttagccacaaattttgtatggggtacgttgttgcttaccgcatcgcacacccattttaatgctcaaagga |
37366959 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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