View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2739_high_2 (Length: 778)

Name: NF2739_high_2
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2739_high_2
NF2739_high_2
[»] chr3 (7 HSPs)
chr3 (68-764)||(4270500-4271197)
chr3 (312-542)||(13811169-13811399)
chr3 (405-462)||(12213492-12213549)
chr3 (680-760)||(13811430-13811510)
chr3 (420-462)||(12213440-12213482)
chr3 (5-42)||(4271222-4271259)
chr3 (680-752)||(12213289-12213361)
[»] chr7 (12 HSPs)
chr7 (188-764)||(41551755-41552331)
chr7 (188-764)||(6623684-6624260)
chr7 (188-764)||(6609868-6610444)
chr7 (68-188)||(41552268-41552391)
chr7 (77-188)||(6610381-6610493)
chr7 (77-188)||(6623635-6623747)
chr7 (312-538)||(9691294-9691516)
chr7 (312-462)||(9805554-9805704)
chr7 (680-760)||(22242195-22242275)
chr7 (5-42)||(6610547-6610584)
chr7 (5-42)||(6623538-6623575)
chr7 (5-42)||(41552416-41552453)
[»] chr4 (4 HSPs)
chr4 (188-764)||(55045054-55045630)
chr4 (68-188)||(55045567-55045690)
chr4 (312-538)||(13557671-13557893)
chr4 (5-42)||(55045715-55045752)
[»] chr1 (7 HSPs)
chr1 (188-764)||(19145443-19146019)
chr1 (188-764)||(23672779-23673355)
chr1 (77-188)||(19145394-19145506)
chr1 (77-188)||(23672730-23672842)
chr1 (409-576)||(17229513-17229679)
chr1 (5-42)||(19145321-19145358)
chr1 (5-42)||(23672657-23672694)
[»] scaffold0031 (1 HSPs)
scaffold0031 (402-674)||(40713-40985)
[»] scaffold0008 (2 HSPs)
scaffold0008 (312-542)||(115800-116029)
scaffold0008 (680-760)||(115689-115769)
[»] chr6 (4 HSPs)
chr6 (312-542)||(22043166-22043395)
chr6 (680-760)||(22043426-22043506)
chr6 (409-511)||(22879350-22879447)
chr6 (409-511)||(22897470-22897567)
[»] chr2 (3 HSPs)
chr2 (312-542)||(44353545-44353774)
chr2 (409-576)||(198158-198324)
chr2 (680-760)||(44353805-44353885)
[»] scaffold0186 (2 HSPs)
scaffold0186 (312-542)||(30257-30483)
scaffold0186 (680-760)||(30146-30226)
[»] scaffold0421 (1 HSPs)
scaffold0421 (678-760)||(13975-14057)
[»] chr8 (8 HSPs)
chr8 (403-462)||(2503753-2503812)
chr8 (403-461)||(2499711-2499769)
chr8 (680-760)||(31397544-31397624)
chr8 (680-760)||(2499855-2499935)
chr8 (680-760)||(2503588-2503668)
chr8 (405-438)||(2503720-2503753)
chr8 (318-380)||(2499626-2499689)
chr8 (406-437)||(2499771-2499802)


Alignment Details
Target: chr3 (Bit Score: 641; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 68 - 764
Target Start/End: Complemental strand, 4271197 - 4270500
Alignment:
Q  68 gtgtctcacctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagct 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  4271197 gtgtctcacctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacagct 4271098  T
Q  168 ta-ttagctctctcccaaacaatttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagca 266  Q
    || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4271097 taattagctctctcccaaacaatttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagca 4270998  T
Q  267 actgcgatctccttctgcgattcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttg 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4270997 actgcgatctccttctgcgattcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttg 4270898  T
Q  367 atgaaggttaaaatttattttgaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaa 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4270897 atgaaggttaaaatttattttgaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaa 4270798  T
Q  467 gcttgatagtatttagatgtttagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgt 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4270797 gcttgatagtatttagatgtttagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatggattgttgtcaattaagatgt 4270698  T
Q  567 tgcgttgttgctactatttgatttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgcca 666  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4270697 tacgttgttgctactatttgatttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgcca 4270598  T
Q  667 aacatgtcctatattgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 764  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  4270597 aacatgtcctatattgttagtaaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 4270500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 312 - 542
Target Start/End: Original strand, 13811169 - 13811399
Alignment:
Q  312 tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatc--atttgggtatgatga 408  Q
    |||||||||| ||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| ||||||   | ||||| |   | ||    |||||||    
T  13811169 tttccgtcgctgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttgaattagaaattc---atgatga 13811265  T
Q  409 agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa 508  Q
    ||||||||||||||||||||||||||||||| || |||| ||||| ||||||||  || ||||||||||||||| |||||||||||||||| ||||||||    
T  13811266 agaaattaatcatattagggtatgatactgagttggtgagaatttagggttaaatgaaacttgatagtatttagttgtttagttcataattgagttaaaa 13811365  T
Q  509 tctctgttatttgctactgtttgattgttgcatt 542  Q
    ||| |||||||||||||||| |||||||||||||    
T  13811366 tctatgttatttgctactgtctgattgttgcatt 13811399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 12213549 - 12213492
Alignment:
Q  405 atgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaa 462  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  12213549 atgaagaaattaatcatattagggtatgatactgagttagtgataatttagggttaaa 12213492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 680 - 760
Target Start/End: Original strand, 13811430 - 13811510
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    ||||||||| |||||| |||| | |||||||       |||||||||||||||||||||||||||| |||||| |||||||    
T  13811430 ttgttagtacaaaatcataagttctccccaatttttatagtttgattgtggttgttcctctaaatgatatcacgtagagtt 13811510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 462
Target Start/End: Complemental strand, 12213482 - 12213440
Alignment:
Q  420 atattagggtatgatactgatttagtgataattttgggttaaa 462  Q
    |||||||||||||||||||| ||||||||||||| ||||||||    
T  12213482 atattagggtatgatactgagttagtgataatttagggttaaa 12213440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 4271259 - 4271222
Alignment:
Q  5 ggtagataattcttaaaacaaataagaaatagatctag 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4271259 ggtaaataattcttaaaacaaataagaaatagatctag 4271222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 752
Target Start/End: Complemental strand, 12213361 - 12213289
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcac 752  Q
    ||||||||| |||||| |||| |||||||||       ||||||||||| |||||||||||||||| ||||||    
T  12213361 ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtagttgttcctctaaatgatatcac 12213289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Complemental strand, 41552331 - 41551755
Alignment:
Q  188 atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 287  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41552331 atttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 41552232  T
Q  288 tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 387  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41552231 tcaacggttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 41552132  T
Q  388 gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 487  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41552131 gaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 41552032  T
Q  488 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41552031 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 41551932  T
Q  588 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41551931 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 41551832  T
Q  688 aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 764  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  41551831 aaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 41551755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Original strand, 6623684 - 6624260
Alignment:
Q  188 atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 287  Q
    |||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  6623684 atttcctccgaggcctccatctctccctcaaccacgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgtgat 6623783  T
Q  288 tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6623784 tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggctaaaatttatttt 6623883  T
Q  388 gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6623884 gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagtttgatagtatttagatgtt 6623983  T
Q  488 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6623984 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactgtttga 6624083  T
Q  588 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  6624084 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttggtttgtgtcaaacatgtcctatattgttagt 6624183  T
Q  688 aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 764  Q
    |||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||    
T  6624184 aaaaaatcttaagctttccccaatttttttagtttgattgcggttgttcctctaaatgttatcacatagagttagtg 6624260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Complemental strand, 6610444 - 6609868
Alignment:
Q  188 atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 287  Q
    ||||||||  |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  6610444 atttcctccaaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttccgcaat 6610345  T
Q  288 tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6610344 tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggctaaaatttatttt 6610245  T
Q  388 gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6610244 gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagtttgatagtatttagatgtt 6610145  T
Q  488 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6610144 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactgtttga 6610045  T
Q  588 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||    
T  6610044 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttggtttgtgtcaaacatgtcctatattgttggt 6609945  T
Q  688 aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 764  Q
    |||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||||||||    
T  6609944 aaaaaatcttaagctttccccaatttttttagtttgattgcggttgttcctctaaatgttatcacatagagttagtg 6609868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 41552391 - 41552268
Alignment:
Q  68 gtgtctcacctctct--ctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacag 165  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  41552391 gtgtctcacctctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacag 41552292  T
Q  166 ctt-attagctctctcccaaacaa 188  Q
    ||| |||||||||||||| |||||    
T  41552291 cttaattagctctctccccaacaa 41552268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 6610493 - 6610381
Alignment:
Q  77 ctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagctt-attagct 175  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||    
T  6610493 ctctctctctacgagagtgaattctgctttctccatccctctctccgccatttcctccaaggcctccatctctccctcaaccgcgacagcttaattagct 6610394  T
Q  176 ctctcccaaacaa 188  Q
    ||||||| |||||    
T  6610393 ctctccccaacaa 6610381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 6623635 - 6623747
Alignment:
Q  77 ctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagctt-attagct 175  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  6623635 ctctctctctacgagagtgaattctgctttctccatccctctctccgccatttcctccgaggcctccatctctccctcaaccacgacagcttaattagct 6623734  T
Q  176 ctctcccaaacaa 188  Q
    ||||||| |||||    
T  6623735 ctctccccaacaa 6623747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 312 - 538
Target Start/End: Complemental strand, 9691516 - 9691294
Alignment:
Q  312 tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaa--atcatttgggtatgatga 408  Q
    |||| ||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| ||||||   | |||||  || | ||    |||||||    
T  9691516 tttctgtcgccgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgttgaattataaattc---atgatga 9691420  T
Q  409 agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa 508  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||  |    ||||||||||||| | |||||||||||||| ||||||||    
T  9691419 agaaattaatcatattagggtatgatactgagttagtgagaatttagggttaaatga----tgatagtatttagttatttagttcataattgagttaaaa 9691324  T
Q  509 tctctgttatttgctactgtttgattgttg 538  Q
    ||| ||||||||||||||||  ||||||||    
T  9691323 tctatgttatttgctactgtcagattgttg 9691294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 9805704 - 9805554
Alignment:
Q  312 tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatc--atttgggtatgatga 408  Q
    ||||| |||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| ||||||   | ||||| |   | ||    |||||||    
T  9805704 tttccttcgccgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttgaattagaaattc---atgatga 9805608  T
Q  409 agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaa 462  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  9805607 agaaattaatcatattagggtatgatactgagttagtgataatttagggttaaa 9805554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 22242275 - 22242195
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    ||||||||| |||||| |||| |||||||||       |||||||||||||||||||||||||||| |||||| |||||||    
T  22242275 ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacttagagtt 22242195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 6610584 - 6610547
Alignment:
Q  5 ggtagataattcttaaaacaaataagaaatagatctag 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  6610584 ggtaaataattcttaaaacaaataagaaatagatctag 6610547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 6623538 - 6623575
Alignment:
Q  5 ggtagataattcttaaaacaaataagaaatagatctag 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  6623538 ggtaaataattcttaaaacaaataagaaatagatctag 6623575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 41552453 - 41552416
Alignment:
Q  5 ggtagataattcttaaaacaaataagaaatagatctag 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  41552453 ggtaaataattcttaaaacaaataagaaatagatctag 41552416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Complemental strand, 55045630 - 55045054
Alignment:
Q  188 atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 287  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55045630 atttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 55045531  T
Q  288 tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 387  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55045530 tcaacggttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 55045431  T
Q  388 gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 487  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55045430 gaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 55045331  T
Q  488 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55045330 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 55045231  T
Q  588 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55045230 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 55045131  T
Q  688 aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 764  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  55045130 aaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 55045054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 55045690 - 55045567
Alignment:
Q  68 gtgtctcacctctct--ctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacag 165  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  55045690 gtgtctcacctctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacag 55045591  T
Q  166 ctt-attagctctctcccaaacaa 188  Q
    ||| |||||||||||||| |||||    
T  55045590 cttaattagctctctccccaacaa 55045567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 312 - 538
Target Start/End: Complemental strand, 13557893 - 13557671
Alignment:
Q  312 tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaa--atcatttgggtatgatga 408  Q
    |||| ||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| ||||||   | |||||  || | ||    |||||||    
T  13557893 tttctgtcgccgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgttgaattataaattc---atgatga 13557797  T
Q  409 agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa 508  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||  |    ||||||||||||| | |||||||||||||| ||||||||    
T  13557796 agaaattaatcatattagggtatgatactgagttagtgagaatttagggttaaatga----tgatagtatttagttatttagttcataattgagttaaaa 13557701  T
Q  509 tctctgttatttgctactgtttgattgttg 538  Q
    ||| ||||||||||||||||  ||||||||    
T  13557700 tctatgttatttgctactgtcagattgttg 13557671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 55045752 - 55045715
Alignment:
Q  5 ggtagataattcttaaaacaaataagaaatagatctag 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  55045752 ggtaaataattcttaaaacaaataagaaatagatctag 55045715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Original strand, 19145443 - 19146019
Alignment:
Q  188 atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 287  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19145443 atttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 19145542  T
Q  288 tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19145543 tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 19145642  T
Q  388 gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 487  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19145643 gaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 19145742  T
Q  488 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 587  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19145743 tagttcataattaagttaaaatctctgttatttgctattgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 19145842  T
Q  588 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19145843 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 19145942  T
Q  688 aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 764  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  19145943 aaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 19146019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Original strand, 23672779 - 23673355
Alignment:
Q  188 atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 287  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23672779 atttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat 23672878  T
Q  288 tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 387  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23672879 tcaacggttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt 23672978  T
Q  388 gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 487  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23672979 gaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt 23673078  T
Q  488 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23673079 tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga 23673178  T
Q  588 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23673179 tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt 23673278  T
Q  688 aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 764  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  23673279 aaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg 23673355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 19145394 - 19145506
Alignment:
Q  77 ctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagctt-attagct 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  19145394 ctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacagcttaattagct 19145493  T
Q  176 ctctcccaaacaa 188  Q
    ||||||| |||||    
T  19145494 ctctccccaacaa 19145506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 23672730 - 23672842
Alignment:
Q  77 ctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagctt-attagct 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  23672730 ctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacagcttaattagct 23672829  T
Q  176 ctctcccaaacaa 188  Q
    ||||||| |||||    
T  23672830 ctctccccaacaa 23672842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 576
Target Start/End: Complemental strand, 17229679 - 17229513
Alignment:
Q  409 agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa 508  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||   || | | |||||| ||||| |||||| ||||||||  |||||||    
T  17229679 agaaattaatcatattagggaatgatactgattttgtgagaattatgggttaattgaaacctaatagtaattagaagtttagctcataattttgttaaaa 17229580  T
Q  509 tc-tctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttg 576  Q
    || |||||||  |  || ||| | |||||||| || |||||||||||| |||||||||||  |||||||    
T  17229579 tcttctgttacat--tattgtcttattgttgccttttgggttgttgtctattaagatgttatgttgttg 17229513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 19145321 - 19145358
Alignment:
Q  5 ggtagataattcttaaaacaaataagaaatagatctag 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  19145321 ggtaaataattcttaaaacaaataagaaatagatctag 19145358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 23672657 - 23672694
Alignment:
Q  5 ggtagataattcttaaaacaaataagaaatagatctag 42  Q
    |||| |||||||||||||||||||||||||||||||||    
T  23672657 ggtaaataattcttaaaacaaataagaaatagatctag 23672694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 402 - 674
Target Start/End: Complemental strand, 40985 - 40713
Alignment:
Q  402 atgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaa 501  Q
    ||||| ||||||| ||||| |||||| ||||||||||||||||||| || |||| ||||||  || |||||||||||||| | ||||| ||||||||||     
T  40985 atgatcaagaaatcaatcaaattaggttatgatactgatttagtgagaactttgagttaaatgaaacttgatagtatttaaaagtttacttcataattat 40886  T
Q  502 gttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttgatttgttggtaattg 601  Q
     ||||||| |||||||||||||||||| ||||  ||||||| ||| | |||| | ||||||||| |  ||||||| |||| | | ||||||||||||| |    
T  40885 cttaaaatttctgttatttgctactgtctgatatttgcattttggctcgttgcctattaagatgctatgttgttgttactgtcttatttgttggtaatcg 40786  T
Q  602 caaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtc 674  Q
    ||||||||| ||| |||| ||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  40785 caaatgggtttgggatgataatttgtgttggttaagttaagtcattctttagttggtttgtgtcaaacatgtc 40713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 100; Significance: 5e-49; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 312 - 542
Target Start/End: Complemental strand, 116029 - 115800
Alignment:
Q  312 tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatcatttgggtatgatgaag 410  Q
    ||||||||||||||||||| |||| ||||| |||||| |||| ||||||||||||| |||||| ||||||  ||| |  ||| ||      |||||||||    
T  116029 tttccgtcgccgaatctcttcgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaata-attgtttaattataaattcatgatgaag 115931  T
Q  411 aaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatc 510  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||  ||||||||||||| |||| |||||||||||||||| ||||||||||    
T  115930 aaattaatcatattagggtatgatactgagttagtgagaatttagggttaaatgaagcttgatagta-ttagttgtttagttcataattgagttaaaatc 115832  T
Q  511 tctgttatttgctactgtttgattgttgcatt 542  Q
    | | |||||||||||||| |||||||||||||    
T  115831 tatattatttgctactgtctgattgttgcatt 115800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 115769 - 115689
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    ||||||||| |||||| |||| |||||||||       |||||||||||||||||||||||||||| |||||| |||||||    
T  115769 ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacgtagagtt 115689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 312 - 542
Target Start/End: Original strand, 22043166 - 22043395
Alignment:
Q  312 tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatcatttgggtatgatgaag 410  Q
    |||||||||||||||||||| ||| ||||| |||||| |||| ||||||||||||||||||||| |||  | |||||  ||| |       ||||| |||    
T  22043166 tttccgtcgccgaatctctctgttaaaggtgatgtttatctcaaatcttgtatttgatgaaggtaaaa--taatttttgaattagaaattcatgataaag 22043263  T
Q  411 aaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatc 510  Q
    ||||||||||||||||||||||||||| | ||||||| ||||| ||||||||  |||||||||||||||||| |||||||||||||||| ||||||||||    
T  22043264 aaattaatcatattagggtatgatacttacttagtgagaatttagggttaaatgaagcttgatagtatttagttgtttagttcataattgagttaaaatc 22043363  T
Q  511 tctgttatttgctactgtttgattgttgcatt 542  Q
    | |||||||| |||| || |||||||||||||    
T  22043364 tatgttattttctaccgtctgattgttgcatt 22043395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Original strand, 22043426 - 22043506
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    ||||||||| |||||| |||| |||||||||       |||||||||||||||||||||||||||| |||||| |||||||    
T  22043426 ttgttagtacaaaatcataagttttccccaaattttgtagtttgattgtggttgttcctctaaatgatatcacgtagagtt 22043506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 511
Target Start/End: Complemental strand, 22879447 - 22879350
Alignment:
Q  409 agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa 508  Q
    |||||||||||||||     ||||||| |||||| |||| |||| || |||||   |||| |||||||||||||| |||||| ||||||||  |||||||    
T  22879447 agaaattaatcatat-----tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaa 22879353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 511
Target Start/End: Complemental strand, 22897567 - 22897470
Alignment:
Q  409 agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa 508  Q
    |||||||||||||||     ||||||| |||||| |||| |||| || |||||   |||| |||||||||||||| |||||| ||||||||  |||||||    
T  22897567 agaaattaatcatat-----tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaa 22897473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 312 - 542
Target Start/End: Original strand, 44353545 - 44353774
Alignment:
Q  312 tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatcatttgggtatgatgaag 410  Q
    |||||||||||||||||||| ||| ||||| |||||| |||| ||||||||||||||||||||| |||  | |||||  ||| |       ||||| |||    
T  44353545 tttccgtcgccgaatctctctgttaaaggtgatgtttatctcaaatcttgtatttgatgaaggtaaaa--taatttttgaattagaaattcatgataaag 44353642  T
Q  411 aaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatc 510  Q
    ||||||||||||||||||||||||||| | ||||||| ||||| ||||||||  |||||||||||||||||| |||||||||||||||| ||||||||||    
T  44353643 aaattaatcatattagggtatgatacttacttagtgagaatttagggttaaatgaagcttgatagtatttagttgtttagttcataattgagttaaaatc 44353742  T
Q  511 tctgttatttgctactgtttgattgttgcatt 542  Q
    | |||||||| |||| || |||||||||||||    
T  44353743 tatgttattttctaccgtctgattgttgcatt 44353774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 409 - 576
Target Start/End: Complemental strand, 198324 - 198158
Alignment:
Q  409 agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa 508  Q
    |||||||||||||||||||||||||||||||||| |||| |||| ||||||||   || | |||||||||||||| |||||| ||||||||  |||||||    
T  198324 agaaattaatcatattagggtatgatactgattttgtgagaattatgggttaattgaaacctgatagtatttagaagtttaggtcataattttgttaaaa 198225  T
Q  509 tc-tctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttg 576  Q
    || ||| |||  |  |||||| | |||||||| || |||||||||||| |||||||||||  |||||||    
T  198224 tcttctattacat--tactgtcttattgttgccttttgggttgttgtctattaagatgttatgttgttg 198158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Original strand, 44353805 - 44353885
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    ||||||||| |||||| |||| |||||||||       |||||||||||||||||||||||||||| |||||| |||||||    
T  44353805 ttgttagtacaaaatcataagttttccccaaattttgtagtttgattgtggttgttcctctaaatgatatcacgtagagtt 44353885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 95; Significance: 5e-46; HSPs: 2)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 312 - 542
Target Start/End: Complemental strand, 30483 - 30257
Alignment:
Q  312 tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatcatttgggtatgatgaag 410  Q
    |||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| ||||||   | ||||| | |       |||||||||    
T  30483 tttccgtcgccgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgttgaatt-agaaaatcatgatgaag 30385  T
Q  411 aaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatc 510  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||  |    ||||||||||||| |||||||||||||||| ||||||||||    
T  30384 aaattaatcatattagggtatgatactgagttagtgagaatttagggttaaatga----tgatagtatttagttgtttagttcataattgagttaaaatc 30289  T
Q  511 tctgttatttgctactgtttgattgttgcatt 542  Q
    | |||||||||||||||| |||||||||||||    
T  30288 tatgttatttgctactgtctgattgttgcatt 30257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 30226 - 30146
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    ||||||||| |||||| |||| |||||| ||       |||||||||||||||||||||||||||| |||||| |||||||    
T  30226 ttgttagtacaaaatcataagttttccctaatttttgtagtttgattgtggttgttcctctaaatgatatcacgtagagtt 30146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 678 - 760
Target Start/End: Original strand, 13975 - 14057
Alignment:
Q  678 tattgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    |||||||||||||||||| |||| |||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  13975 tattgttagtaaaaaatcataagttttccccaaaatttttagtttgattgtggttgttcctctaaatgttatcacatagagtt 14057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 2503812 - 2503753
Alignment:
Q  403 tgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaa 462  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  2503812 tgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttagggttaaa 2503753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 403 - 461
Target Start/End: Original strand, 2499711 - 2499769
Alignment:
Q  403 tgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaa 461  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  2499711 tgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttagggttaa 2499769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 31397624 - 31397544
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    ||||||||| |||||| |||| |||||||||       |||||||||||||||||||||||||||| |||||| |||||||    
T  31397624 ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacttagagtt 31397544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 680 - 760
Target Start/End: Original strand, 2499855 - 2499935
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    ||||||||| |||||| |||| |||||||||       |||||||||||||||||| ||||||||| |||||| |||||||    
T  2499855 ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttactctaaatgatatcacgtagagtt 2499935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 2503668 - 2503588
Alignment:
Q  680 ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt 760  Q
    ||||||||| |||||| |||| |||||||||       |||||||||||||||||| ||||||||| |||||| |||||||    
T  2503668 ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttactctaaatgatatcacgtagagtt 2503588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 438
Target Start/End: Complemental strand, 2503753 - 2503720
Alignment:
Q  405 atgaagaaattaatcatattagggtatgatactg 438  Q
    ||||||||||||||||||||||||||||||||||    
T  2503753 atgaagaaattaatcatattagggtatgatactg 2503720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 2499626 - 2499689
Alignment:
Q  318 tcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaat 380  Q
    |||||||||||||| ||| ||||| |||||| |||| ||||||||||||| |||||| ||||||    
T  2499626 tcgccgaatctctcagttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaat 2499689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 437
Target Start/End: Original strand, 2499771 - 2499802
Alignment:
Q  406 tgaagaaattaatcatattagggtatgatact 437  Q
    ||||||||||||||||||||||||||||||||    
T  2499771 tgaagaaattaatcatattagggtatgatact 2499802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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