View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_high_21 (Length: 357)
Name: NF2739_high_21
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 3573623 - 3573276
Alignment:
| Q |
1 |
catgccgtccgttttcttctctgacgatctcctcactagttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573623 |
catgccgtccgttttcttctctgacgatctcctcactagttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttgga |
3573524 |
T |
|
| Q |
101 |
acactctcattt---atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaat |
197 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573523 |
acactctcatttccgatcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaat |
3573424 |
T |
|
| Q |
198 |
caaaggagttgaccctgacggtagggacgatctctatgaggaagattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573423 |
caaaggagttgaccctgacggtagggacgatctctatgaggaagattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacc |
3573324 |
T |
|
| Q |
298 |
cttgtcgctgattctcactctctattgaatcaaaatcattacaatatt |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573323 |
cttgtcgctgattctcactctctattgaatcaaaatcattacaatatt |
3573276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 49 - 332
Target Start/End: Original strand, 3564858 - 3565144
Alignment:
| Q |
49 |
ttacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt---atcccaatttcatgaaattctatctcaagaaat |
145 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||| |
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| T |
3564858 |
ttacttcctgtaaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcatttccgatcccaattttgtgaaattccatctcatgaaat |
3564957 |
T |
|
| Q |
146 |
caaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaatcaaaggagttgaccctgacggtagggacgatctctatgaggaagatta |
245 |
Q |
| |
|
||||||||||||||| | | |||| |||||| || | ||| |||| ||||| ||| | |||| | ||||| |||||| |||| ||||| |
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| T |
3564958 |
caaaatcacaaaatcaatacttcacactaataactcatcacctaaaaattatcaagggaaattccccttatggtagtgacgatgaagctgagattgatta |
3565057 |
T |
|
| Q |
246 |
cagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattgaatcaaaa |
332 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||| || ||||| |||| |||||| |||||||| | |||||| |||| |
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| T |
3565058 |
cagtatcattccatatcctatacctcgtttactcgataacccgtcatttacggttgttgctgatcctcactctatgttgaatgaaaa |
3565144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 241 - 326
Target Start/End: Complemental strand, 1687034 - 1686949
Alignment:
| Q |
241 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattgaa |
326 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||| ||||||| ||| |||||||||| |||||| |||||||||||||||| |
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| T |
1687034 |
gattacagtttcattccatatcctatatcttgtttactcgataacctgtcgattacccttgttgctgatcctcactctctattgaa |
1686949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 332
Target Start/End: Original strand, 3556832 - 3557126
Alignment:
| Q |
41 |
tcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt---atcccaatttcatgaaattctatct |
137 |
Q |
| |
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|||||||||||||| |||||||||| || ||||| || | ||| |||||||| |||||||| |||| |||| |||||||||| |||||||| |||| |
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| T |
3556832 |
tcctttcattactttctgtgaaatctctacttcgatttagatgcgtaagtaagtcttggaacgctctaatttctgatcccaattttgtgaaattccatct |
3556931 |
T |
|
| Q |
138 |
caagaaatcaaaatcacaaaatccacaattcaaactaatctctgagaaccacaaaacaatcaaaggagttgaccctgacggtagggacgatctctatgag |
237 |
Q |
| |
|
||||| ||||||||||||||||| || |||| |||| || || | || |||||| || | |||| |||| |||| || ||| || | |||| |
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| T |
3556932 |
caagagatcaaaatcacaaaatcaactcttcacactagtcactaaatacatcaaaactattatgggagaatccccttacggaagtgactatgaatctgag |
3557031 |
T |
|
| Q |
238 |
gaagattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattgaatcaaaa |
332 |
Q |
| |
|
|||||| ||||||||||||| |||||| | |||||||| |||||||| || ||||||||| || ||||| ||| ||||||||||||| |||| |
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| T |
3557032 |
actgattacggtatcattccataccctataccccgtttactcgataacccgtcctttacccttatcactgatcctcgctctctattgaatgaaaa |
3557126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 1687304 - 1687154
Alignment:
| Q |
14 |
ttcttctctgacgatctcctca-ctagttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt |
112 |
Q |
| |
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||||||||||| ||||||||| | || |||||||||||||| |||||||||| || ||||| |||| ||| |||||||| |||||||| |||| |||| |
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| T |
1687304 |
ttcttctctgatgatctcctcgtcgagatcctttcattactttctgtgaaatctctccttcgattcagatgcgtaagtaagtcttggaacgctctaattt |
1687205 |
T |
|
| Q |
113 |
---atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatc |
160 |
Q |
| |
|
||||| ||| |||||||| ||||||||| ||||||||||||||||| |
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| T |
1687204 |
ctgatcccttttttgtgaaattccatctcaagagatcaaaatcacaaaatc |
1687154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 39379828 - 39379744
Alignment:
| Q |
241 |
gattacagtatcattccatatcctatatctcgtttacttgataacccttcgtttacccttgtcgctgattctcactctctattga |
325 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||| ||||||||||||||||||||||| |||||| |||||| |||||||| |
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| T |
39379828 |
gattacagtatcattccataccctatacctcgtatactcgataacccttcgtttacccttgttgctgatcctcactttctattga |
39379744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 165
Target Start/End: Complemental strand, 39380014 - 39379862
Alignment:
| Q |
17 |
ttctctgacgatctcctcact-agttcctttcattacttcctgtgaaatcacttcttcgtttcaaatgtgtaagtaatccttggaacactctcattt--- |
112 |
Q |
| |
|
||||| |||||||| ||||| || ||||||| ||||||||||| ||||| || ||||| |||||||||||||| ||||||||||| |||||||||| |
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| T |
39380014 |
ttctccgacgatcttctcaccgagatcctttcgttacttcctgtaaaatctctacttcgattcaaatgtgtaagcaatccttggaaaactctcatttccg |
39379915 |
T |
|
| Q |
113 |
atcccaatttcatgaaattctatctcaagaaatcaaaatcacaaaatccacaa |
165 |
Q |
| |
|
|||||||||| | ||||| | ||||||||| |||||||| |||||||||| |
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|
| T |
39379914 |
atcccaattttgtcaaatttcacttcaagaaattaaaatcacgaaatccacaa |
39379862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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