View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2739_high_22 (Length: 321)

Name: NF2739_high_22
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2739_high_22
NF2739_high_22
[»] chr2 (7 HSPs)
chr2 (15-316)||(11156722-11157023)
chr2 (22-160)||(11150061-11150199)
chr2 (25-154)||(11146095-11146224)
chr2 (29-140)||(11137794-11137905)
chr2 (34-135)||(10793204-10793305)
chr2 (59-135)||(11111514-11111590)
chr2 (59-135)||(11119285-11119361)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 11156722 - 11157023
Alignment:
Q  15 attcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11156722 attcagcaccgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattaga 11156821  T
Q  115 aaacaatgcaactttgttaactcaaattctgcagaactagatttagccactatagcctccatagtagaatcattagaggatggtattgctagtgtaatat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11156822 aaacaatgcaactttgttaactcaaattctgcagaactagatttagccactatagcctccatagtagaatcattagaggatggtattgctagtgtaatat 11156921  T
Q  215 aaataaattagcgtcaatgcacttattgaaatcttgtgactagatgccactaataaataagttataactaggcacatttcatgtcacttgaaatcctatg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11156922 aaataaattagcgtcaatgcacttattgaaatcttgtgactagatgccactaataaataagttataactaggcacatttcatgtcacttgaaatcctatg 11157021  T
Q  315 ct 316  Q
    ||    
T  11157022 ct 11157023  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 11150061 - 11150199
Alignment:
Q  22 accgatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattagaaaacaat 121  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| |||||||||||| |||| ||||   |||||||||||||||||||||    
T  11150061 accgatcaaaaagctttttttgagagctttaaggctgctatgatcaaaatgggaaatattggtgtgttaactgggaaacaaggagagattagaaaacaat 11150160  T
Q  122 gcaactttgttaactcaaattctgcagaactagatttag 160  Q
    ||||||||||||| ||||| || | |||||||| |||||    
T  11150161 gcaactttgttaattcaaaatcagtagaactaggtttag 11150199  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 11146095 - 11146224
Alignment:
Q  25 gatcaaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattagaaaacaatgca 124  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||   ||||||||||||||||||||||||    
T  11146095 gatcaaaaagctttttttgagagctttaaggctgctatgattaaaatgggaaatattggtgtgttaaccgggaaccaaggagagattagaaaacaatgca 11146194  T
Q  125 actttgttaactcaaattctgcagaactag 154  Q
    |||||||||| ||||| || | ||||||||    
T  11146195 actttgttaattcaaaatcagtagaactag 11146224  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 11137794 - 11137905
Alignment:
Q  29 aaaacgctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattagaaaacaatgcaactt 128  Q
    |||| ||||||||||| |||||| | || || |||||||||||||| |||||||||||||| || ||||  |||||||||||||||||||| ||||| ||    
T  11137794 aaaatgctttctttgatagctttgaagccgccatgattaaaatgggtaatattggtgtgctgaccgggaaaaaaggagagattagaaaacattgcaattt 11137893  T
Q  129 tgttaactcaaa 140  Q
    |||||| |||||    
T  11137894 tgttaattcaaa 11137905  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 10793305 - 10793204
Alignment:
Q  34 gctttctttgagagctttaaggctgcaatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattagaaaacaatgcaactttgtta 133  Q
    |||||||||||||||||||||   ||||||||||||||||| |||||||||||||| || || | ||||||||| || || ||||||||||| |||||||    
T  10793305 gctttctttgagagctttaagaaagcaatgattaaaatgggtaatattggtgtgcttaccggaaagaaaggagaaataaggaaacaatgcaattttgtta 10793206  T
Q  134 ac 135  Q
    ||    
T  10793205 ac 10793204  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 11111514 - 11111590
Alignment:
Q  59 caatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattagaaaacaatgcaactttgttaac 135  Q
    |||||||||||||||| ||||||| |||||| || || | ||||||||| ||||||||||||||||| ||| |||||    
T  11111514 caatgattaaaatgggtaatattgatgtgcttaccggaaagaaaggagaaattagaaaacaatgcaattttattaac 11111590  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 11119285 - 11119361
Alignment:
Q  59 caatgattaaaatgggcaatattggtgtgctaacagggacgaaaggagagattagaaaacaatgcaactttgttaac 135  Q
    |||||||||||||||| |||||||| ||||| || || | ||||||||| |||||||| || ||||| |||||||||    
T  11119285 caatgattaaaatgggtaatattggcgtgcttactggaaagaaaggagaaattagaaagcagtgcaattttgttaac 11119361  T

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