View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2739_high_27 (Length: 251)
Name: NF2739_high_27
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_27 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 4675362 - 4675576
Alignment:
| Q |
37 |
tgagacagaaagtaatttgcattgattcccaatcccattgacagacacaccttgaactttaaaaaattatacaaaccacctttggtttttgaattttgaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4675362 |
tgagacagaaagtaatttgcattgattctcaatcccattgacagacacaccttgaactttaaaaaattatacaaaccacctttggtttttgaattttgaa |
4675461 |
T |
|
| Q |
137 |
cccctgaaaaatttgattttgtaccattatcccaagaggctttctcaccctttcaaattcacatcacactatctctctatcgtctcccatcttcccttcc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4675462 |
cccctgaaaaatttgattttgtaccattatcccaagaggctttctcaccctttcaaattcacatcacactatctctctatcgtctcccatcttcccttcc |
4675561 |
T |
|
| Q |
237 |
acctccttgtaaaac |
251 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4675562 |
acctccttgtaaaac |
4675576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University