View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_high_28 (Length: 248)
Name: NF2739_high_28
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 6752406 - 6752308
Alignment:
| Q |
134 |
agaatggcgactccaccagtagtcaaattcccgatcttcgcaacggtgagagttatcggagttgtgatcgctattcttctcttaacatgggttgttcat |
232 |
Q |
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| T |
6752406 |
agaatggcgactccaccagtagtcaaattcccgatcttcgcaacggtgagagttatcggagttgtgatcgctattcttctcttaacatgggttgttcat |
6752308 |
T |
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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 6752520 - 6752451
Alignment:
| Q |
20 |
ataagaagaaactgaatttattcctagttttctttttcctttatacctcaatcacccttcaacatcaaaa |
89 |
Q |
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| T |
6752520 |
ataagaagaaactgaatttattcctagttttctttttcctttatacctcaatcacccttcaacatcaaaa |
6752451 |
T |
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