View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_high_3 (Length: 722)
Name: NF2739_high_3
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 328 - 719
Target Start/End: Original strand, 2151678 - 2152069
Alignment:
| Q |
328 |
ggtaagtaaagtttgaccaaagattgtttcaggcatgattcgtgttttaggtctttcgagcaaactgtccttaagtggaactcattaaccacttaagtcc |
427 |
Q |
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| T |
2151678 |
ggtaagtaaagtctgacaaaaaatcgtttcagccatgattcgagtttgtggtcttccgagcaaattgtccttaactggaactcattaaccactcaagtcc |
2151777 |
T |
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| Q |
428 |
actcactagcttattaaaacattttacaatttatatgaaaatattctcttgcttctagaatatatagacattttctgagcttatagagacatgataagtg |
527 |
Q |
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| T |
2151778 |
attcactagcttattgaaacattttacaatttagatgaaaatattattttgcttgtagaatatatcgacattttctgagcttatagagacatgataagtg |
2151877 |
T |
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| Q |
528 |
cttaacttaactgtgtataaaccttaatttgatcgagcataataacatcttaatgcaggttaatagctcacctaagttgataatcactggacttgctctt |
627 |
Q |
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| T |
2151878 |
cttaacttaactgtgtataaaccttaatttgatcaagcataataacatcttaatgcaggttaatagctcacctaagttgataatcactggacttgctctt |
2151977 |
T |
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| Q |
628 |
ggaggatcaattgcttcactcttcactttattactattagatggatttgactcaagaaagaaaaaacctctttgcattacctttgcttctcc |
719 |
Q |
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| T |
2151978 |
ggaggatcaattgcttcactcttcactttattactattagatggatttgactcaagaaagaaaaaacctctttgcattacctttggttctcc |
2152069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 2151387 - 2151609
Alignment:
| Q |
20 |
aattgtagcatttgagaccgcaccgtcgaattctgccaatcttcaatctgaatcgttttcatctactgaactcaaggagaagaatttccttcattttcag |
119 |
Q |
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| T |
2151387 |
aattgtagcatttgagaccgcaccgtcgaattctgccaatcttcaatctgaattggtttcatctactgaactcaaggagaagaatttccttcattttcag |
2151486 |
T |
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| Q |
120 |
tttttgagtactaaagcaaatccacttttttctcttaacattgcagcagtttcactcttctttgaaaatcatgagagtcttgatcaattgaagactgagg |
219 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| |||||| |
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| T |
2151487 |
tttttgagtactaaagcaaatcctctttttcatcttaacattgcagcagtttcactcttctttgaaaatcatcaagggcttgatcaattgaaatctgagg |
2151586 |
T |
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| Q |
220 |
tacatcttttcctgttcattatt |
242 |
Q |
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|||| ||||||| |||||||| |
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| T |
2151587 |
tacaatttttccttgtcattatt |
2151609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 669
Target Start/End: Original strand, 2205858 - 2205903
Alignment:
| Q |
624 |
tcttggaggatcaattgcttcactcttcactttattactattagat |
669 |
Q |
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| T |
2205858 |
tcttggaggatcaatagcttcactcttcacaatatcactattagat |
2205903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 2108490 - 2108450
Alignment:
| Q |
328 |
ggtaagtaaagtttgaccaaagattgtttcaggcatgattc |
368 |
Q |
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| T |
2108490 |
ggtaagtaaagtttgaccaatgattgtttcagtcatgattc |
2108450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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