View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2739_high_33 (Length: 233)

Name: NF2739_high_33
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2739_high_33
NF2739_high_33
[»] chr8 (7 HSPs)
chr8 (71-203)||(4676000-4676131)
chr8 (15-76)||(4678245-4678306)
chr8 (116-155)||(14935573-14935612)
chr8 (116-152)||(3379310-3379346)
chr8 (116-152)||(5567425-5567461)
chr8 (194-231)||(21132717-21132754)
chr8 (116-152)||(30224229-30224265)
[»] chr7 (5 HSPs)
chr7 (116-155)||(37405646-37405685)
chr7 (116-152)||(4895583-4895619)
chr7 (116-152)||(20046693-20046729)
chr7 (116-152)||(28124784-28124820)
chr7 (116-152)||(28126611-28126647)
[»] chr6 (8 HSPs)
chr6 (116-155)||(15866576-15866615)
chr6 (116-155)||(15868388-15868427)
chr6 (116-155)||(32079906-32079945)
chr6 (116-155)||(33869242-33869281)
chr6 (116-154)||(33866096-33866134)
chr6 (197-226)||(2310479-2310508)
chr6 (116-152)||(5376876-5376912)
chr6 (116-152)||(5378731-5378767)
[»] chr5 (4 HSPs)
chr5 (116-155)||(39787255-39787294)
chr5 (119-155)||(25076315-25076351)
chr5 (119-155)||(25134284-25134320)
chr5 (197-225)||(28319856-28319884)
[»] chr4 (11 HSPs)
chr4 (116-155)||(23985770-23985809)
chr4 (116-155)||(52545297-52545336)
chr4 (116-152)||(18656107-18656143)
chr4 (116-155)||(18320074-18320113)
chr4 (116-155)||(18395830-18395869)
chr4 (116-155)||(18398570-18398609)
chr4 (116-155)||(24807420-24807459)
chr4 (116-152)||(7040360-7040396)
chr4 (116-152)||(23564871-23564907)
chr4 (116-152)||(52518758-52518794)
chr4 (116-152)||(52520600-52520636)
[»] chr1 (12 HSPs)
chr1 (116-155)||(3282797-3282836)
chr1 (116-155)||(3284498-3284537)
chr1 (116-155)||(9312025-9312064)
chr1 (116-155)||(37664751-37664790)
chr1 (116-155)||(37674473-37674512)
chr1 (116-155)||(37702182-37702221)
chr1 (116-155)||(902073-902112)
chr1 (116-155)||(5924970-5925009)
chr1 (116-155)||(9310408-9310447)
chr1 (116-152)||(16808775-16808811)
chr1 (205-233)||(36035919-36035947)
chr1 (116-152)||(48940675-48940711)
[»] scaffold0251 (1 HSPs)
scaffold0251 (116-155)||(6222-6261)
[»] scaffold0006 (1 HSPs)
scaffold0006 (116-155)||(39141-39180)
[»] chr3 (3 HSPs)
chr3 (203-231)||(900884-900912)
chr3 (116-152)||(17402979-17403015)
chr3 (205-233)||(38878276-38878304)
[»] chr2 (1 HSPs)
chr2 (116-152)||(29758119-29758155)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 4676131 - 4676000
Alignment:
Q  71 taattacatcttcacttacatatcaaaagtcttcaattcttattaaactctagtttatctatcaactaactatagttgattattcctaacaattctaaag 170  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  4676131 taattagatcttcacttacatatcaaaagtcttcaattcttattaaactctagtttacc-atcaactaactatagttgattattcctaacaattctaaag 4676033  T
Q  171 acaaaatccccaattgttgacatataaaaaata 203  Q
    |||||||||||||||||||||||||||||||||    
T  4676032 acaaaatccccaattgttgacatataaaaaata 4676000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 4678306 - 4678245
Alignment:
Q  15 aacatcatcacacaaaaacaaaaatctttgtttgtagacgtataaatgatttcgagtaatta 76  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  4678306 aacatcatcacacgaaaacaaaaatctttgtttgtagacgtataaatggtttcgagtaatta 4678245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 14935612 - 14935573
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  14935612 aactctagtttacctatcaactaactatagttgattattc 14935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 3379310 - 3379346
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    |||||||||||| ||||||||||||||||||||||||    
T  3379310 aactctagtttaactatcaactaactatagttgatta 3379346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 5567461 - 5567425
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5567461 aactctagtttagctatcaactaactatagttgatta 5567425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 21132717 - 21132754
Alignment:
Q  194 ataaaaaatactacttcctccgtcccttaataagtgac 231  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  21132717 ataaaaaatagtactccctccgtcccttaataagtgac 21132754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 30224265 - 30224229
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  30224265 aactctagtttacttatcaactaactatagttgatta 30224229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 37405646 - 37405685
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37405646 aactctagtttatctatcaactaactatagttgattattc 37405685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 4895619 - 4895583
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  4895619 aactctagtttacttatcaactaactatagttgatta 4895583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 20046693 - 20046729
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  20046693 aactctagtttacttatcaactaactatagttgatta 20046729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 28124784 - 28124820
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  28124784 aactctagtttacttatcaactaactatagttgatta 28124820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 28126611 - 28126647
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  28126611 aactctagtttacttatcaactaactatagttgatta 28126647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 15866615 - 15866576
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  15866615 aactctagtttacctatcaactaactatagttgattattc 15866576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 15868427 - 15868388
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  15868427 aactctagtttacctatcaactaactatagttgattattc 15868388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 32079945 - 32079906
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  32079945 aactctagtttacctatcaactaactatagttgattattc 32079906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 33869281 - 33869242
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  33869281 aactctagtttacctatcaactaactatagttgattattc 33869242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 33866134 - 33866096
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattatt 154  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  33866134 aactctagtttacctatcaactaactatagttgattatt 33866096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 2310508 - 2310479
Alignment:
Q  197 aaaaatactacttcctccgtcccttaataa 226  Q
    ||||||||||||||||||||||||||||||    
T  2310508 aaaaatactacttcctccgtcccttaataa 2310479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 5376912 - 5376876
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  5376912 aactctagtttacttatcaactaactatagttgatta 5376876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 5378767 - 5378731
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  5378767 aactctagtttacttatcaactaactatagttgatta 5378731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 39787255 - 39787294
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  39787255 aactctagtttacctatcaactaactatagttgattattc 39787294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 25076315 - 25076351
Alignment:
Q  119 tctagtttatctatcaactaactatagttgattattc 155  Q
    ||||||| | |||||||||||||||||||||||||||    
T  25076315 tctagttaacctatcaactaactatagttgattattc 25076351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 25134284 - 25134320
Alignment:
Q  119 tctagtttatctatcaactaactatagttgattattc 155  Q
    ||||||| | |||||||||||||||||||||||||||    
T  25134284 tctagttaacctatcaactaactatagttgattattc 25134320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Complemental strand, 28319884 - 28319856
Alignment:
Q  197 aaaaatactacttcctccgtcccttaata 225  Q
    |||||||||||||||||||||||||||||    
T  28319884 aaaaatactacttcctccgtcccttaata 28319856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 23985809 - 23985770
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  23985809 aactctagtttacctatcaactaactatagttgattattc 23985770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 52545297 - 52545336
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  52545297 aactctagtttacctatcaactaactatagttgattattc 52545336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 18656143 - 18656107
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    |||||||||||| ||||||||||||||||||||||||    
T  18656143 aactctagtttagctatcaactaactatagttgatta 18656107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 18320113 - 18320074
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  18320113 aactctagtttacctatcaattaactatagttgattattc 18320074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 18395830 - 18395869
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  18395830 aactatagtttacctatcaactaactatagttgattattc 18395869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 18398570 - 18398609
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  18398570 aactctagtttacctatcaattaactatagttgattattc 18398609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 24807459 - 24807420
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  24807459 aactctaatttacctatcaactaactatagttgattattc 24807420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 7040396 - 7040360
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  7040396 aactctagtttacttatcaactaactatagttgatta 7040360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 23564871 - 23564907
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  23564871 aactctagtttacttatcaactaactatagttgatta 23564907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 52518794 - 52518758
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  52518794 aactctagtttacttatcaactaactatagttgatta 52518758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 52520636 - 52520600
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  52520636 aactctagtttacttatcaactaactatagttgatta 52520600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 3282836 - 3282797
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  3282836 aactctagtttacctatcaactaactatagttgattattc 3282797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 3284537 - 3284498
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  3284537 aactctagtttacctatcaactaactatagttgattattc 3284498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 9312064 - 9312025
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  9312064 aactctagtttacctatcaactaactatagttgattattc 9312025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 37664751 - 37664790
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  37664751 aactctagtttacctatcaactaactatagttgattattc 37664790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 37674473 - 37674512
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  37674473 aactctagtttacctatcaactaactatagttgattattc 37674512  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 37702221 - 37702182
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  37702221 aactctagtttacctatcaactaactatagttgattattc 37702182  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 902112 - 902073
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  902112 aactctagtttacctatcaactaactatagatgattattc 902073  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 5924970 - 5925009
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  5924970 aactctaatttacctatcaactaactatagttgattattc 5925009  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 9310447 - 9310408
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  9310447 aactctagtttacttatcaactaactatagttgattattc 9310408  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 16808775 - 16808811
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  16808775 aactctagtttacttatcaactaactatagttgatta 16808811  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 36035947 - 36035919
Alignment:
Q  205 tacttcctccgtcccttaataagtgacct 233  Q
    |||||||||||||||||||||||||||||    
T  36035947 tacttcctccgtcccttaataagtgacct 36035919  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 48940711 - 48940675
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  48940711 aactctagtttacttatcaactaactatagttgatta 48940675  T

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Target: scaffold0251 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 6261 - 6222
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  6261 aactctagtttacctatcaattaactatagttgattattc 6222  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Complemental strand, 39180 - 39141
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgattattc 155  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  39180 aactctagtttacttatcaactaactatagttgattattc 39141  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 900884 - 900912
Alignment:
Q  203 actacttcctccgtcccttaataagtgac 231  Q
    |||||||||||||||||||||||||||||    
T  900884 actacttcctccgtcccttaataagtgac 900912  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17402979 - 17403015
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  17402979 aactctagtttacttatcaactaactatagttgatta 17403015  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 38878276 - 38878304
Alignment:
Q  205 tacttcctccgtcccttaataagtgacct 233  Q
    |||||||||||||||||||||||||||||    
T  38878276 tacttcctccgtcccttaataagtgacct 38878304  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 29758155 - 29758119
Alignment:
Q  116 aactctagtttatctatcaactaactatagttgatta 152  Q
    ||||||||||||  |||||||||||||||||||||||    
T  29758155 aactctagtttacttatcaactaactatagttgatta 29758119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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