View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_high_34 (Length: 227)
Name: NF2739_high_34
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 48172079 - 48171862
Alignment:
| Q |
1 |
ccaaatctgaataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcgcgtcctttgatga |
100 |
Q |
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| T |
48172079 |
ccaaatctgaataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcgcgtcctttgatga |
48171980 |
T |
|
| Q |
101 |
gtgatgttgtaactgctttgagttttctttccacttctcctcctccagaagctgttcctgcacctcttccacctcccaattgtacctcccaaaagagtgt |
200 |
Q |
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| T |
48171979 |
gtgatgttgtaactgctttgagttttctttccacttctcctcctccagaagctgttcctgcacctcttccacctcccaattgtacctcccaaaagagtgt |
48171880 |
T |
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| Q |
201 |
tgccactgccgatgaaag |
218 |
Q |
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|||||||||||||||||| |
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| T |
48171879 |
tgccactgccgatgaaag |
48171862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 35288435 - 35288547
Alignment:
| Q |
22 |
ccagaaaaggatctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcgcgtcctttgatgagtgatgttgtaactgctttga |
121 |
Q |
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|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| ||| ||||||||||| | || ||||| || ||| ||| |
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| T |
35288435 |
ccagaaaaggatcttaatcaagctgttgcaatagcagccatgtgcttacaagaggaaccagaagctcgtcctttgatcggcgacgttgtgaccgctctga |
35288534 |
T |
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| Q |
122 |
gttttctttccac |
134 |
Q |
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| T |
35288535 |
gttttctttccac |
35288547 |
T |
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