View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2739_high_4 (Length: 706)

Name: NF2739_high_4
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2739_high_4
NF2739_high_4
[»] chr4 (1 HSPs)
chr4 (18-689)||(18095967-18096638)
[»] chr2 (4 HSPs)
chr2 (18-689)||(37853573-37854244)
chr2 (643-689)||(21090128-21090174)
chr2 (139-201)||(21551063-21551125)
chr2 (403-528)||(21089880-21090005)
[»] scaffold0008 (4 HSPs)
scaffold0008 (403-468)||(64357-64422)
scaffold0008 (403-456)||(51913-51966)
scaffold0008 (643-686)||(51675-51718)
scaffold0008 (642-683)||(64125-64166)
[»] chr1 (2 HSPs)
chr1 (411-466)||(31523619-31523674)
chr1 (643-686)||(31523864-31523907)
[»] chr3 (2 HSPs)
chr3 (124-178)||(24182299-24182353)
chr3 (140-184)||(41214855-41214899)
[»] chr6 (3 HSPs)
chr6 (163-203)||(3678447-3678487)
chr6 (163-199)||(20239260-20239296)
chr6 (163-199)||(22133244-22133280)
[»] chr5 (3 HSPs)
chr5 (132-178)||(11744227-11744273)
chr5 (137-202)||(28811985-28812050)
chr5 (139-179)||(4239526-4239566)
[»] chr7 (1 HSPs)
chr7 (132-177)||(3530281-3530326)


Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 18 - 689
Target Start/End: Original strand, 18095967 - 18096638
Alignment:
Q  18 atttccggtatgtaattaatttatgagaggaacaattcttgaccagactttacttacttcttgatcgaattctagattaccagacttttattctaaaaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||     
T  18095967 atttccggtatgtaattaatttatgagaggaacaattcttgaccaaactttacttacttcttgaacgaattctagattaccagacatttattctaaaaaa 18096066  T
Q  118 gttacaaaccaaagaatttgactcaagtggttaatgaattccactaaatgacaaattgttcaaaagaatttgagtttgatttctgagctaaacaattttt 217  Q
     ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  18096067 tttataaaccaaggaatttgactcaagtggttaatgaattccactaaatgacaaattgttcaaaagaatttgaatttgatttctgagcgaaacaattttt 18096166  T
Q  218 agccaaattttacttactttccgattgaactctagattatcgggactcgttttccggagaactggatcacnnnnnnntatctattacacttagtgatgtg 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||| |||||    
T  18096167 agccaaactttacttactttccgattgaactctagattatcgggactcgttttccggagaactggatcacaaaaaaatatttattacacttagttatgtg 18096266  T
Q  318 cttttccttgtatgttggtgtaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaatttttctccgtgtgcaggattatca 417  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18096267 cttttccttgtatgttggtgaaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaatttttctccgtgtgcaggattatca 18096366  T
Q  418 tccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaatactagattaaggaac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18096367 tccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaatactagattaaggaac 18096466  T
Q  518 ctgtttggatatactcnnnnnnncataaccacttttttggtgttaatagtaagtcctatatctattcaactaattgtgaactttgattcatttaggatga 617  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18096467 ctgtttggatatactctttttttcataaccacttttttggtgttaatagtaagtcctatatctattcaactaattgtgaactttgattcatttaggaaga 18096566  T
Q  618 ttttgattttcaaataaatttattgtagttggatttagcaacatctggtaaaggaggacttggaacttttat 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18096567 ttttgattttcaaataaatttattgtagttggatttagcaacatctggtaaaggaggacttggaacttttat 18096638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 574; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 18 - 689
Target Start/End: Original strand, 37853573 - 37854244
Alignment:
Q  18 atttccggtatgtaattaatttatgagaggaacaattcttgaccagactttacttacttcttgatcgaattctagattaccagacttttattctaaaaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||     
T  37853573 atttccggtatgtaattaatttatgagaggaacaattcttgaccaaactttacttacttcttgaacgaattctagattaccagacatttattctaaaaaa 37853672  T
Q  118 gttacaaaccaaagaatttgactcaagtggttaatgaattccactaaatgacaaattgttcaaaagaatttgagtttgatttctgagctaaacaattttt 217  Q
     ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  37853673 tttataaaccaaggaatttgactcaagtggttaatgaattccactaaatgacaaattgttcaaaagaatttgaatttgatttctgagcgaaacaattttt 37853772  T
Q  218 agccaaattttacttactttccgattgaactctagattatcgggactcgttttccggagaactggatcacnnnnnnntatctattacacttagtgatgtg 317  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||| |||||    
T  37853773 agccaaactttacttactttccgattgaactctagattatcgggactcgttttccggagaactggatcacaaaaaaatatttattacacttagttatgtg 37853872  T
Q  318 cttttccttgtatgttggtgtaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaatttttctccgtgtgcaggattatca 417  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37853873 cttttccttgtatgttggtgaaatttaatgttgaaaactagaatcatcttgtaaagaaataattcaattaattaatttttctccgtgtgcaggattatca 37853972  T
Q  418 tccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaatactagattaaggaac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37853973 tccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaatactagattaaggaac 37854072  T
Q  518 ctgtttggatatactcnnnnnnncataaccacttttttggtgttaatagtaagtcctatatctattcaactaattgtgaactttgattcatttaggatga 617  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37854073 ctgtttggatatactctttttttcataaccacttttttggtgttaatagtaagtcctatatctattcaactaattgtgaactttgattcatttaggaaga 37854172  T
Q  618 ttttgattttcaaataaatttattgtagttggatttagcaacatctggtaaaggaggacttggaacttttat 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37854173 ttttgattttcaaataaatttattgtagttggatttagcaacatctggtaaaggaggacttggaacttttat 37854244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 643 - 689
Target Start/End: Original strand, 21090128 - 21090174
Alignment:
Q  643 tagttggatttagcaacatctggtaaaggaggacttggaacttttat 689  Q
    ||||||||||||||||||||||||||||||||  | |||||||||||    
T  21090128 tagttggatttagcaacatctggtaaaggagggatcggaacttttat 21090174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 21551063 - 21551125
Alignment:
Q  139 ctcaagtggttaatgaattccactaaatgacaaattgttcaaaagaatttgagtttgatttct 201  Q
    |||||||||||||| ||||||||||||  ||||||| |||| || |||||||| |||||||||    
T  21551063 ctcaagtggttaattaattccactaaagaacaaattattcagaaaaatttgagattgatttct 21551125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 403 - 528
Target Start/End: Original strand, 21089880 - 21090005
Alignment:
Q  403 tgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacacttgctatattgtcttataatgaggcaaaagtcaat 502  Q
    ||||||| | || ||||| || |||||||||||  ||||||| |||||||||| | ||| |||||  || |||||| |||| |||||||| ||| ||| |    
T  21089880 tgtgcagaaataccatccttctagggtgcttaccattgtatatcagccatttgtatttgcaacacaagcaatattggcttacaatgaggccaaaatcagt 21089979  T
Q  503 actagattaaggaacctgtttggata 528  Q
    || ||  || |||||||||| |||||    
T  21089980 acaaggatacggaacctgttcggata 21090005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 64422 - 64357
Alignment:
Q  403 tgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgcagttggaacact 468  Q
    ||||||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||    
T  64422 tgtgcagaaatatcatccctctagggtgcttactcttgtatatcagccatttgcagttggaacact 64357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 456
Target Start/End: Complemental strand, 51966 - 51913
Alignment:
Q  403 tgtgcaggattatcatccctccagggtgcttacacttgtataccagccatttgc 456  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  51966 tgtgcagaattatcatccctctagggtgcttactcttgtataccaaccatttgc 51913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 686
Target Start/End: Complemental strand, 51718 - 51675
Alignment:
Q  643 tagttggatttagcaacatctggtaaaggaggacttggaacttt 686  Q
    ||||||||||||||| ||||||| |||||||| |||||||||||    
T  51718 tagttggatttagcatcatctggaaaaggagggcttggaacttt 51675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 642 - 683
Target Start/End: Complemental strand, 64166 - 64125
Alignment:
Q  642 gtagttggatttagcaacatctggtaaaggaggacttggaac 683  Q
    ||||||||||||||||||||| |||||||||||  |||||||    
T  64166 gtagttggatttagcaacatcgggtaaaggagggattggaac 64125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 411 - 466
Target Start/End: Original strand, 31523619 - 31523674
Alignment:
Q  411 attatcatccctccagggtgcttacacttgtataccagccatttgcagttggaaca 466  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||||||  ||||||||    
T  31523619 attatcatccctctagggtgcttactcttgtataccaaccatttgcttttggaaca 31523674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 643 - 686
Target Start/End: Original strand, 31523864 - 31523907
Alignment:
Q  643 tagttggatttagcaacatctggtaaaggaggacttggaacttt 686  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  31523864 tagttggatttagcaacatctggaaaaggagggcttggaacttt 31523907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 178
Target Start/End: Complemental strand, 24182353 - 24182299
Alignment:
Q  124 aaccaaagaatttgactcaagtggttaatgaattccactaaatgacaaattgttc 178  Q
    ||||||| |||| |||||||||||||||| || |||| |||||||||||||||||    
T  24182353 aaccaaataattagactcaagtggttaataaactccattaaatgacaaattgttc 24182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 41214899 - 41214855
Alignment:
Q  140 tcaagtggttaatgaattccactaaatgacaaattgttcaaaaga 184  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||    
T  41214899 tcaagtggttaatgaactccaccaaatgacaaattgttcataaga 41214855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 3678447 - 3678487
Alignment:
Q  163 aaatgacaaattgttcaaaagaatttgagtttgatttctga 203  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  3678447 aaatgacaaatcgtttaaaagaatttgagtttgatttctga 3678487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 20239260 - 20239296
Alignment:
Q  163 aaatgacaaattgttcaaaagaatttgagtttgattt 199  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  20239260 aaatgacaaattattcaaaagaatctgagtttgattt 20239296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 22133244 - 22133280
Alignment:
Q  163 aaatgacaaattgttcaaaagaatttgagtttgattt 199  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  22133244 aaatgacaaattattcaaaagaatctgagtttgattt 22133280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 11744273 - 11744227
Alignment:
Q  132 aatttgactcaagtggttaatgaattccactaaatgacaaattgttc 178  Q
    ||||||||||||||||||||||| |||||| ||| ||||||| ||||    
T  11744273 aatttgactcaagtggttaatgagttccaccaaaggacaaatcgttc 11744227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 28812050 - 28811985
Alignment:
Q  137 gactcaagtggttaatgaattccactaaatgacaaattgttcaaaagaatttgagtttgatttctg 202  Q
    |||||||||| |||||||||||||| ||| ||| ||||||||   | ||| |||||||||||||||    
T  28812050 gactcaagtgattaatgaattccaccaaaagacgaattgttcgggacaatctgagtttgatttctg 28811985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 4239526 - 4239566
Alignment:
Q  139 ctcaagtggttaatgaattccactaaatgacaaattgttca 179  Q
    ||||||||| ||||||||||||||||||||  |||||||||    
T  4239526 ctcaagtggctaatgaattccactaaatgatgaattgttca 4239566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 177
Target Start/End: Original strand, 3530281 - 3530326
Alignment:
Q  132 aatttgactcaagtggttaatgaattccactaaatgacaaattgtt 177  Q
    |||||||||||||||||||||||  ||||| |||| ||||||||||    
T  3530281 aatttgactcaagtggttaatgagctccacaaaataacaaattgtt 3530326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University