View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2739_high_9 (Length: 528)

Name: NF2739_high_9
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2739_high_9
NF2739_high_9
[»] chr6 (4 HSPs)
chr6 (9-510)||(10978351-10978852)
chr6 (279-328)||(2879134-2879183)
chr6 (287-330)||(22569946-22569989)
chr6 (453-501)||(32930426-32930474)
[»] chr5 (5 HSPs)
chr5 (274-330)||(12029501-12029557)
chr5 (287-330)||(20860431-20860474)
chr5 (287-330)||(31600037-31600080)
chr5 (453-501)||(26070587-26070635)
chr5 (278-330)||(32415783-32415835)
[»] scaffold0210 (1 HSPs)
scaffold0210 (277-328)||(25216-25267)
[»] chr7 (9 HSPs)
chr7 (283-330)||(12865302-12865349)
chr7 (274-331)||(16536750-16536807)
chr7 (274-331)||(16628855-16628912)
chr7 (279-328)||(23689345-23689394)
chr7 (287-330)||(39270235-39270278)
chr7 (288-330)||(2506783-2506825)
chr7 (274-331)||(16577448-16577505)
chr7 (274-331)||(16588157-16588214)
chr7 (274-330)||(7494592-7494648)
[»] chr2 (7 HSPs)
chr2 (274-329)||(39730328-39730383)
chr2 (274-331)||(31449838-31449895)
chr2 (283-334)||(27907480-27907531)
chr2 (442-501)||(34077040-34077099)
chr2 (285-329)||(25532329-25532373)
chr2 (290-330)||(25886156-25886196)
chr2 (274-330)||(28278600-28278656)
[»] chr1 (3 HSPs)
chr1 (283-330)||(22624834-22624881)
chr1 (274-327)||(31313433-31313486)
chr1 (274-330)||(23223292-23223348)
[»] chr8 (4 HSPs)
chr8 (170-300)||(39438673-39438805)
chr8 (56-156)||(39438827-39438928)
chr8 (294-334)||(18446828-18446868)
chr8 (287-330)||(29765353-29765396)
[»] scaffold0049 (1 HSPs)
scaffold0049 (277-328)||(39612-39663)
[»] chr4 (4 HSPs)
chr4 (287-334)||(11782580-11782627)
chr4 (280-322)||(38656512-38656554)
chr4 (283-328)||(12286828-12286873)
chr4 (247-328)||(26117229-26117310)
[»] chr3 (9 HSPs)
chr3 (287-333)||(8765763-8765809)
chr3 (287-333)||(8770653-8770699)
chr3 (283-330)||(13938804-13938851)
chr3 (287-330)||(16223573-16223616)
chr3 (287-334)||(52935495-52935542)
chr3 (282-331)||(5632667-5632716)
chr3 (281-326)||(8145344-8145389)
chr3 (282-330)||(8402728-8402776)
chr3 (466-510)||(31279068-31279112)
[»] scaffold0282 (1 HSPs)
scaffold0282 (274-333)||(22720-22779)
[»] scaffold0072 (1 HSPs)
scaffold0072 (287-330)||(38383-38426)
[»] scaffold0043 (1 HSPs)
scaffold0043 (287-330)||(88398-88441)


Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 9 - 510
Target Start/End: Original strand, 10978351 - 10978852
Alignment:
Q  9 gataatacttgattttgaatgactatttagaactgtttcaagttagaaagatgcattaacatgtcggctggagtgtgaaaatgcctcgacagccctgctg 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  10978351 gataatatttgattttgaatgactatttagaactgtttcaagttagaaagatgcattaacacgtcggctggagtgtgaaaatgcctcgattgccctgctg 10978450  T
Q  109 gctttaagatgatacattatgaaatatagtatggttgagagtatgatttaagcctttaccacttgagcaaaagcgggaagtagtcataacttcaagtgga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978451 gctttaagatgatacattatgaaatatagtatggttgagagtatgatttaagcctttaccacttgagcaaaagcgggaagtagtcataacttcaagtgga 10978550  T
Q  209 atgaacaatggtctgagaacccatatggaaatgtatgccatctaaatattaatgcaaattaagaattctttctattttgttacttgaggacaaacaacct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10978551 atgaacaatggtctgagaacccatatggaaatgtatgccatctaaatattaatgcaaattaagaattctttctattttgttacttgagggcaaacaacct 10978650  T
Q  309 tttaagtttggggttgtgatgataggatatttagctatgttttttagtcatttatttagagtctgaggtcatgctacaaatgttttagaggagattatca 408  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978651 tttaagcttggggttgtgataataggatatttagctacgttttttagtcatttatttagagtctgaggtcatgctacaaatgttttagaggagattatca 10978750  T
Q  409 tggtttaagggatacattgtattgtttttcaattaagtcatttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagtta 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978751 tggtttaagggatacattgtattgtttttcaattaagtcatttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacattgagtta 10978850  T
Q  509 tg 510  Q
    ||    
T  10978851 tg 10978852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 328
Target Start/End: Original strand, 2879134 - 2879183
Alignment:
Q  279 tctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 328  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||||    
T  2879134 tctattttgttacttgaggacaagcaacatattaagtttggggttgtgat 2879183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 22569989 - 22569946
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  22569989 gttacttgaggacaaacaacaatttaagtttggggttgtgatga 22569946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 501
Target Start/End: Complemental strand, 32930474 - 32930426
Alignment:
Q  453 agtctttttagtgagaaattatgaaatttggcaaatcaagacattacat 501  Q
    ||||||||||||||||||| ||| || |||||||| |||||||| ||||    
T  32930474 agtctttttagtgagaaatcatgtaaattggcaaaacaagacatcacat 32930426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 12029501 - 12029557
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  12029501 ttctttctattttgttacttgaggacaaaaaatattttaagtttggggttgtgatga 12029557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 20860474 - 20860431
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  20860474 gttacttgaggacaagcaacagtttaagtttggggttgtgatga 20860431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 31600037 - 31600080
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||    
T  31600037 gttacttgatgacaagcaaccatttaagtttggggttgtgatga 31600080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 501
Target Start/End: Original strand, 26070587 - 26070635
Alignment:
Q  453 agtctttttagtgagaaattatgaaatttggcaaatcaagacattacat 501  Q
    ||||||||||||||||||| ||| || |||||||| |||||||| ||||    
T  26070587 agtctttttagtgagaaatcatgtaaattggcaaaacaagacatcacat 26070635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 32415783 - 32415835
Alignment:
Q  278 ttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    |||| ||| |||||||||| |||||||||  ||||||||| ||||||||||||    
T  32415783 ttctctttcgttacttgagaacaaacaacggtttaagtttagggttgtgatga 32415835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 25267 - 25216
Alignment:
Q  277 tttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 328  Q
    ||||||||||||||||||||||||| |||| | |||||||||||||||||||    
T  25267 tttctattttgttacttgaggacaagcaacatattaagtttggggttgtgat 25216  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 12865349 - 12865302
Alignment:
Q  283 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  12865349 ttttgttacttgaggacaaacaaccgtttaagttttgggttgtgatga 12865302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 16536807 - 16536750
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 331  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||  ||||||||||||    
T  16536807 ttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16536750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 16628855 - 16628912
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 331  Q
    |||||| ||||||||| ||||||||||||||||  |||||||||  ||||||||||||    
T  16628855 ttctttttattttgttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16628912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 23689394 - 23689345
Alignment:
Q  279 tctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 328  Q
    ||||||||||||||||||||||  |||| | |||||||||||||||||||    
T  23689394 tctattttgttacttgaggacatgcaacatattaagtttggggttgtgat 23689345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 39270235 - 39270278
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  39270235 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 39270278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 2506783 - 2506825
Alignment:
Q  288 ttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    |||||||||||||| ||||  ||||||||||||||||||||||    
T  2506783 ttacttgaggacaagcaactatttaagtttggggttgtgatga 2506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 331
Target Start/End: Complemental strand, 16577505 - 16577448
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 331  Q
    |||||| |||||| || ||||||||||||||||  |||||||||  ||||||||||||    
T  16577505 ttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16577448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 16588157 - 16588214
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 331  Q
    |||||| |||||| || ||||||||||||||||  |||||||||  ||||||||||||    
T  16588157 ttctttttatttttttgcttgaggacaaacaacaatttaagtttaaggttgtgatgat 16588214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 7494592 - 7494648
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||| ||||| |||| ||||||||||| ||||  |||||||||| |||||||||||    
T  7494592 ttcttgctattgtgttgcttgaggacaagcaacagtttaagtttgtggttgtgatga 7494648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 39730328 - 39730383
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatg 329  Q
    ||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||    
T  39730328 ttcttgctattttgttgcttgaggacaaataacattttaagtttggggttgtgatg 39730383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 31449838 - 31449895
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 331  Q
    ||||| ||| |||||||||||||||||| ||||  |||||||||||||||||||||||    
T  31449838 ttcttgctaatttgttacttgaggacaagcaacagtttaagtttggggttgtgatgat 31449895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 27907480 - 27907531
Alignment:
Q  283 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatgatagg 334  Q
    ||||||||||||||||||| ||||  |||||  |||||||||||||||||||    
T  27907480 ttttgttacttgaggacaagcaacaatttaaaattggggttgtgatgatagg 27907531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 501
Target Start/End: Original strand, 34077040 - 34077099
Alignment:
Q  442 taagtcatttaagtctttttagtgagaaattatgaaatttggcaaatcaagacattacat 501  Q
    |||||| ||| |||| |||||||||||||| ||| ||||||||||| |||||||| ||||    
T  34077040 taagtcttttgagtcattttagtgagaaatcatgtaatttggcaaaccaagacatcacat 34077099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 25532373 - 25532329
Alignment:
Q  285 ttgttacttgaggacaaacaaccttttaagtttggggttgtgatg 329  Q
    ||||||||||||||||| ||||  ||||| |||||||||||||||    
T  25532373 ttgttacttgaggacaagcaacaatttaattttggggttgtgatg 25532329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 25886156 - 25886196
Alignment:
Q  290 acttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    |||||||||||| ||||  ||||||||||||||||||||||    
T  25886156 acttgaggacaagcaacaatttaagtttggggttgtgatga 25886196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 28278656 - 28278600
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||| ||||| |||| ||||||||||| ||||  ||||||||| ||||||||||||    
T  28278656 ttcttgctattgtgttgcttgaggacaagcaacactttaagttttgggttgtgatga 28278600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 22624834 - 22624881
Alignment:
Q  283 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  22624834 ttttgttacttgaggacaagcaaccgtttaagtttggggttgtgatga 22624881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 31313433 - 31313486
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtga 327  Q
    ||||| |||||||||| | ||||||||| ||||  |||||||||||||||||||    
T  31313433 ttcttgctattttgttgcctgaggacaagcaacagtttaagtttggggttgtga 31313486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 23223292 - 23223348
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||| |||| ||| |||||||  |||  ||||||||||||||||||||||    
T  23223292 ttctttctattgtgttgcttaaggacaagaaacaatttaagtttggggttgtgatga 23223348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 300
Target Start/End: Complemental strand, 39438805 - 39438673
Alignment:
Q  170 cttgagcaaaagcgggaagt-agtcataacttcaagtggaatgaacaatggtctgagaacccata-tggaaatgtatgccatctaaatattaatgcaaat 267  Q
    ||||||| ||||||| |||| ||||| | || ||||| ||| ||||||| || |||||||||||  |||||| ||||| |||||| ||||| ||||||||    
T  39438805 cttgagcgaaagcggtaagttagtcaaagctgcaagttgaacgaacaatagtttgagaacccattctggaaaggtatgtcatctacatatttatgcaaat 39438706  T
Q  268 taagaattctttctattttgttacttgaggaca 300  Q
    |  || ||||| ||||||||||||  |||||||    
T  39438705 tccgacttcttgctattttgttacccgaggaca 39438673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 39438928 - 39438827
Alignment:
Q  56 aagatgcattaacatgtcggctggagtgtgaaaatgcctcgac-agccctgctggctttaagatgatacattatgaaatatagtatggttgagagtatga 154  Q
    ||||||||||||||| | |  |||||||  ||||||||| ||  | |||||||| ||||| |||||||||| ||| |||| ||| |||||||||||||||    
T  39438928 aagatgcattaacatattgaatggagtggaaaaatgccttgagtacccctgctgactttatgatgatacatgatggaatagagtgtggttgagagtatga 39438829  T
Q  155 tt 156  Q
    ||    
T  39438828 tt 39438827  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 18446828 - 18446868
Alignment:
Q  294 gaggacaaacaaccttttaagtttggggttgtgatgatagg 334  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  18446828 gaggacaagcaacattttaagtttggggttgtgatgatagg 18446868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 29765353 - 29765396
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  29765353 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 29765396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 39663 - 39612
Alignment:
Q  277 tttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 328  Q
    ||||||||||||| ||||||||||| |||| | |||||||||||||||||||    
T  39663 tttctattttgttccttgaggacaagcaacatattaagtttggggttgtgat 39612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 11782627 - 11782580
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatagg 334  Q
    ||||||||||||||| || | |||||||||||||||||||||||||||    
T  11782627 gttacttgaggacaagcaccattttaagtttggggttgtgatgatagg 11782580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 38656512 - 38656554
Alignment:
Q  280 ctattttgttacttgaggacaaacaaccttttaagtttggggt 322  Q
    |||||||||||||||||||| ||||||  ||||||||||||||    
T  38656512 ctattttgttacttgaggacgaacaacaatttaagtttggggt 38656554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 12286873 - 12286828
Alignment:
Q  283 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgat 328  Q
    |||||||| |||||||||||||||  |||| |||||||||||||||    
T  12286873 ttttgttatttgaggacaaacaacggtttatgtttggggttgtgat 12286828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 26117229 - 26117310
Alignment:
Q  247 catctaaatattaatgcaaattaagaattctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgat 328  Q
    |||||||| |||  ||||||||| || || || |||||||||||||| | |||||||||   ||||||||||||||| ||||    
T  26117229 catctaaaaatttgtgcaaattacgacttattgctattttgttacttaatgacaaacaatagtttaagtttggggttctgat 26117310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 8765809 - 8765763
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatag 333  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  8765809 gttacttcaggacaagcaaccgtttaagtttggggttgtgatgatag 8765763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 8770699 - 8770653
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatag 333  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  8770699 gttacttcaggacaagcaaccgtttaagtttggggttgtgatgatag 8770653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 13938804 - 13938851
Alignment:
Q  283 ttttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    |||||||| || ||||||||||||  ||||||||||||||||||||||    
T  13938804 ttttgttatttcaggacaaacaacagtttaagtttggggttgtgatga 13938851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 16223616 - 16223573
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  16223616 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 16223573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 52935495 - 52935542
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatgatagg 334  Q
    ||||||||||||||| ||||  ||||| ||||||||||||||||||||    
T  52935495 gttacttgaggacaatcaacaatttaaatttggggttgtgatgatagg 52935542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 5632716 - 5632667
Alignment:
Q  282 attttgttacttgaggacaaacaaccttttaagtttggggttgtgatgat 331  Q
    |||||||| |||| |||||| ||||  |||||||||||||||||||||||    
T  5632716 attttgttgcttggggacaagcaacggtttaagtttggggttgtgatgat 5632667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 8145389 - 8145344
Alignment:
Q  281 tattttgttacttgaggacaaacaaccttttaagtttggggttgtg 326  Q
    ||||| ||||||||||||||| ||||  ||||||||||||||||||    
T  8145389 tatttagttacttgaggacaagcaacaatttaagtttggggttgtg 8145344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 8402776 - 8402728
Alignment:
Q  282 attttgttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    |||||||| |||||||| || ||||  ||||||||||||||||||||||    
T  8402776 attttgttgcttgaggaaaagcaacgatttaagtttggggttgtgatga 8402728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 510
Target Start/End: Complemental strand, 31279112 - 31279068
Alignment:
Q  466 agaaattatgaaatttggcaaatcaagacattacattgagttatg 510  Q
    |||||| ||| |||| | |||||||||||||||||||||||||||    
T  31279112 agaaatcatgtaattcgacaaatcaagacattacattgagttatg 31279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 22779 - 22720
Alignment:
Q  274 ttctttctattttgttacttgaggacaaacaaccttttaagtttggggttgtgatgatag 333  Q
    ||||| ||||| |||| ||||||| ||| ||||  |||||||||||||||||||||||||    
T  22779 ttcttgctattgtgttgcttgagggcaagcaacactttaagtttggggttgtgatgatag 22720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 38426 - 38383
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||    
T  38426 gttacttgaggacaagcaacaatttaagtttggggttgtgatga 38383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 88398 - 88441
Alignment:
Q  287 gttacttgaggacaaacaaccttttaagtttggggttgtgatga 330  Q
    |||| |||||||||||||||  ||||||||||||||||||||||    
T  88398 gttaattgaggacaaacaacaatttaagtttggggttgtgatga 88441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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