View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_low_13 (Length: 446)
Name: NF2739_low_13
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 34219531 - 34219115
Alignment:
| Q |
19 |
atagtgttgttaaatagcagctgtaacatcactatagcaccgtagagtagcgaactttgaacaaatcagtagtttttacgatctgcatgacaacactttt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
34219531 |
atagtgttgttaaatagcagctgtaacatcactatagcaccgtagagtagtgaactttgaacaaatcagtagttcttacgatctgcatgacaaccctttt |
34219432 |
T |
|
| Q |
119 |
aagtgggttaaagccttagacttacatatccaagaagatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34219431 |
aagtgggttaaagccttagacttacatatccaagaagatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataat |
34219332 |
T |
|
| Q |
219 |
agcaccaaaactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactgnnnnnnnnnnnnnnnnnnnnnnga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34219331 |
agcaccaaaactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactgaaacaaataataaagaaaaaaaga |
34219232 |
T |
|
| Q |
319 |
cggaacagatacggggcttaggaaaagagtagtgaatatttctaatttatgaagcaacaaattaaagtcattgaagtatgcttactaagttcctactact |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34219231 |
cggaacagatacggggcttaggaaaagagtagtgaatatttataatttatgaagcaacaaattaaagtcattgaagtatgcttactaagttcctactact |
34219132 |
T |
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| Q |
419 |
cttcttgttaccccttt |
435 |
Q |
| |
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| T |
34219131 |
cttcttgttaccccttt |
34219115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 127 - 294
Target Start/End: Original strand, 34192233 - 34192400
Alignment:
| Q |
127 |
taaagccttagacttacatatccaagaagatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataatagcaccaa |
226 |
Q |
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|||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||| |
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| T |
34192233 |
taaatccttagacttacatatccaagaagatcaagatcatcatagtcacaatattcccggttcttgtttccactaattgtctctagtataataacgccaa |
34192332 |
T |
|
| Q |
227 |
aactaaagacatcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||| || | |||||||| |||||||||||| |
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| T |
34192333 |
aactaaagacatcagatttcaccgagaaaaatccacgtgtcgcgaattctggagacatgtaaccactg |
34192400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 138 - 294
Target Start/End: Complemental strand, 34208256 - 34208100
Alignment:
| Q |
138 |
acttacatatccaagaagatcaaggccatgatagtcacaatattccctgttcttgtttccactaattatctctagtataatagcaccaaaactaaagaca |
237 |
Q |
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|||||||||||||||||| ||||| |||||| ||||| ||||||||||||||| |||||| | ||| |||||||||||||| |||| |||||||||||| |
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| T |
34208256 |
acttacatatccaagaaggtcaagatcatgatggtcactatattccctgttcttttttccagttattgtctctagtataataacaccgaaactaaagaca |
34208157 |
T |
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| Q |
238 |
tcagatttcaccgagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
294 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34208156 |
tctgatttcacggagaaaaatccacgtgctgcatactctggagatatgtaaccactg |
34208100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 427
Target Start/End: Original strand, 34192445 - 34192528
Alignment:
| Q |
348 |
tagtgaatatttctaatttatgaagcaacaaattaaagtcat----tgaagtatgcttactaagttcctactactcttcttgtt |
427 |
Q |
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|||||||||||| || ||||| ||| |||||||||||||||| | ||| || |||||||||||||||||| |||||||||| |
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| T |
34192445 |
tagtgaatatttatagtttataaagaaacaaattaaagtcatcaatttaagcatacttactaagttcctactattcttcttgtt |
34192528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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