View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_low_16 (Length: 426)
Name: NF2739_low_16
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 188 - 413
Target Start/End: Complemental strand, 36912366 - 36912141
Alignment:
| Q |
188 |
caattaaagtaacaaccccactacatgtacacattgatgctgacatcttacttccattccaagtttggttctttacaacattcttaatcttattattctc |
287 |
Q |
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| T |
36912366 |
caattaaagtaacaaccccactacatgtacacattgatgctgacatcttacttccattccaagtttggttctttacaacattcttaatcttattattctc |
36912267 |
T |
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| Q |
288 |
atatagtcatgtgacactctttattttacggagaatcggagattgtgatctacgttgttctaggctctttaagaaataatgacgttctttatcttttaac |
387 |
Q |
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| T |
36912266 |
atatagtcatgtgacactctttattttacggagaatcggagattgtgatctatgttgttctaggctctttaagaaataatgacgttctttatcttttaac |
36912167 |
T |
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| Q |
388 |
aaagagaaacacaaattgttctttat |
413 |
Q |
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| T |
36912166 |
aaagagaaacacaaattgttctttat |
36912141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 36912509 - 36912435
Alignment:
| Q |
46 |
ctttccacaacattaataatgaattgattattcacggagttcaaataatgaaactgtgcggatgacaattgtaga |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36912509 |
ctttccacaacattaataatgaattgattattcacggagttcaaataataaaactgtgcggatgacaattgtaga |
36912435 |
T |
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