View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_low_19 (Length: 367)
Name: NF2739_low_19
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_19 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 120951 - 121261
Alignment:
| Q |
18 |
atttgtggatggtggctttaggttattatgttgaataatccnnnnnnnnnnnnctctggatagagctgtttgctgaggttgatttttgtaagtagtgatt |
117 |
Q |
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| T |
120951 |
atttgtggatggtggcttaaggttattatgttgaataatcctttttcttttttctctggatagagctgtttgctgaggttgatttttgtaagtagtgatt |
121050 |
T |
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| Q |
118 |
ggtattggtttgaccacttgaggagaaggagtacaaattcttttggatgtagcaagttccttagttttgttaagaatccttttcctgttttgtcttttaa |
217 |
Q |
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| T |
121051 |
ggtattggtttgaccacttgaggagaaggagtacaaattc-------------------cttagttttgttaagaatcctttttctgttttctcttttaa |
121131 |
T |
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| Q |
218 |
gtgttgcatttgattgttggagcactgtttcatcatggctaacagatttgtttcgtttccctattggtttgatagttgaagtttgtgaattaatatttga |
317 |
Q |
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| T |
121132 |
gtgttgcatttgattgttggagcactgtttcatcatggctaacagatttgtttcgtttccctattggtttgatagttgaagtttgtgaattaatatttga |
121231 |
T |
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| Q |
318 |
tgttgaacctattttcttcccttctaaaag |
347 |
Q |
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| T |
121232 |
tgttgaacctattttcttcccttctaaaag |
121261 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 23690113 - 23690183
Alignment:
| Q |
182 |
ttttgttaagaatccttttcctgttttgtcttttaagtgttgcatttgattgttggagcactgtttcatca |
252 |
Q |
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| T |
23690113 |
ttttgttaagaatccttttcctgttgtctcttcctttggttgcatttgattgttgaagcactgtttcatca |
23690183 |
T |
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