View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2739_low_2 (Length: 778)
Name: NF2739_low_2
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_2 |
 | |
|
| [»] scaffold0031 (1 HSPs) |
| | |
|
| [»] scaffold0008 (2 HSPs) |
| | |
|
| [»] scaffold0186 (2 HSPs) |
| | |
|
| [»] scaffold0421 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 641; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 68 - 764
Target Start/End: Complemental strand, 4271197 - 4270500
Alignment:
| Q |
68 |
gtgtctcacctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagct |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4271197 |
gtgtctcacctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacagct |
4271098 |
T |
|
| Q |
168 |
ta-ttagctctctcccaaacaatttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagca |
266 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4271097 |
taattagctctctcccaaacaatttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagca |
4270998 |
T |
|
| Q |
267 |
actgcgatctccttctgcgattcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttg |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270997 |
actgcgatctccttctgcgattcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttg |
4270898 |
T |
|
| Q |
367 |
atgaaggttaaaatttattttgaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaa |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270897 |
atgaaggttaaaatttattttgaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaa |
4270798 |
T |
|
| Q |
467 |
gcttgatagtatttagatgtttagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgt |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4270797 |
gcttgatagtatttagatgtttagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatggattgttgtcaattaagatgt |
4270698 |
T |
|
| Q |
567 |
tgcgttgttgctactatttgatttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgcca |
666 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270697 |
tacgttgttgctactatttgatttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgcca |
4270598 |
T |
|
| Q |
667 |
aacatgtcctatattgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
764 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4270597 |
aacatgtcctatattgttagtaaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
4270500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 312 - 542
Target Start/End: Original strand, 13811169 - 13811399
Alignment:
| Q |
312 |
tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatc--atttgggtatgatga |
408 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| |||||| | ||||| | | || ||||||| |
|
|
| T |
13811169 |
tttccgtcgctgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttgaattagaaattc---atgatga |
13811265 |
T |
|
| Q |
409 |
agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| ||||| |||||||| || ||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
13811266 |
agaaattaatcatattagggtatgatactgagttggtgagaatttagggttaaatgaaacttgatagtatttagttgtttagttcataattgagttaaaa |
13811365 |
T |
|
| Q |
509 |
tctctgttatttgctactgtttgattgttgcatt |
542 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||| |
|
|
| T |
13811366 |
tctatgttatttgctactgtctgattgttgcatt |
13811399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 12213549 - 12213492
Alignment:
| Q |
405 |
atgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaa |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
12213549 |
atgaagaaattaatcatattagggtatgatactgagttagtgataatttagggttaaa |
12213492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 680 - 760
Target Start/End: Original strand, 13811430 - 13811510
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
||||||||| |||||| |||| | ||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
13811430 |
ttgttagtacaaaatcataagttctccccaatttttatagtttgattgtggttgttcctctaaatgatatcacgtagagtt |
13811510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 462
Target Start/End: Complemental strand, 12213482 - 12213440
Alignment:
| Q |
420 |
atattagggtatgatactgatttagtgataattttgggttaaa |
462 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
12213482 |
atattagggtatgatactgagttagtgataatttagggttaaa |
12213440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 4271259 - 4271222
Alignment:
| Q |
5 |
ggtagataattcttaaaacaaataagaaatagatctag |
42 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4271259 |
ggtaaataattcttaaaacaaataagaaatagatctag |
4271222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 680 - 752
Target Start/End: Complemental strand, 12213361 - 12213289
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcac |
752 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
12213361 |
ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtagttgttcctctaaatgatatcac |
12213289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Complemental strand, 41552331 - 41551755
Alignment:
| Q |
188 |
atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
287 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41552331 |
atttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
41552232 |
T |
|
| Q |
288 |
tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
387 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41552231 |
tcaacggttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
41552132 |
T |
|
| Q |
388 |
gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41552131 |
gaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
41552032 |
T |
|
| Q |
488 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41552031 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
41551932 |
T |
|
| Q |
588 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41551931 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
41551832 |
T |
|
| Q |
688 |
aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
764 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41551831 |
aaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
41551755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Original strand, 6623684 - 6624260
Alignment:
| Q |
188 |
atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
287 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6623684 |
atttcctccgaggcctccatctctccctcaaccacgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgtgat |
6623783 |
T |
|
| Q |
288 |
tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6623784 |
tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggctaaaatttatttt |
6623883 |
T |
|
| Q |
388 |
gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6623884 |
gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagtttgatagtatttagatgtt |
6623983 |
T |
|
| Q |
488 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6623984 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactgtttga |
6624083 |
T |
|
| Q |
588 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
6624084 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttggtttgtgtcaaacatgtcctatattgttagt |
6624183 |
T |
|
| Q |
688 |
aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
764 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6624184 |
aaaaaatcttaagctttccccaatttttttagtttgattgcggttgttcctctaaatgttatcacatagagttagtg |
6624260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Complemental strand, 6610444 - 6609868
Alignment:
| Q |
188 |
atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
287 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
6610444 |
atttcctccaaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttccgcaat |
6610345 |
T |
|
| Q |
288 |
tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6610344 |
tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggctaaaatttatttt |
6610245 |
T |
|
| Q |
388 |
gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6610244 |
gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagtttgatagtatttagatgtt |
6610145 |
T |
|
| Q |
488 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6610144 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactgtttga |
6610045 |
T |
|
| Q |
588 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |
|
|
| T |
6610044 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttggtttgtgtcaaacatgtcctatattgttggt |
6609945 |
T |
|
| Q |
688 |
aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
764 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6609944 |
aaaaaatcttaagctttccccaatttttttagtttgattgcggttgttcctctaaatgttatcacatagagttagtg |
6609868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 41552391 - 41552268
Alignment:
| Q |
68 |
gtgtctcacctctct--ctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacag |
165 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41552391 |
gtgtctcacctctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacag |
41552292 |
T |
|
| Q |
166 |
ctt-attagctctctcccaaacaa |
188 |
Q |
| |
|
||| |||||||||||||| ||||| |
|
|
| T |
41552291 |
cttaattagctctctccccaacaa |
41552268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 6610493 - 6610381
Alignment:
| Q |
77 |
ctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagctt-attagct |
175 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6610493 |
ctctctctctacgagagtgaattctgctttctccatccctctctccgccatttcctccaaggcctccatctctccctcaaccgcgacagcttaattagct |
6610394 |
T |
|
| Q |
176 |
ctctcccaaacaa |
188 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
6610393 |
ctctccccaacaa |
6610381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 6623635 - 6623747
Alignment:
| Q |
77 |
ctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagctt-attagct |
175 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6623635 |
ctctctctctacgagagtgaattctgctttctccatccctctctccgccatttcctccgaggcctccatctctccctcaaccacgacagcttaattagct |
6623734 |
T |
|
| Q |
176 |
ctctcccaaacaa |
188 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
6623735 |
ctctccccaacaa |
6623747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 312 - 538
Target Start/End: Complemental strand, 9691516 - 9691294
Alignment:
| Q |
312 |
tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaa--atcatttgggtatgatga |
408 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| |||||| | ||||| || | || ||||||| |
|
|
| T |
9691516 |
tttctgtcgccgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgttgaattataaattc---atgatga |
9691420 |
T |
|
| Q |
409 |
agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| | ||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
9691419 |
agaaattaatcatattagggtatgatactgagttagtgagaatttagggttaaatga----tgatagtatttagttatttagttcataattgagttaaaa |
9691324 |
T |
|
| Q |
509 |
tctctgttatttgctactgtttgattgttg |
538 |
Q |
| |
|
||| |||||||||||||||| |||||||| |
|
|
| T |
9691323 |
tctatgttatttgctactgtcagattgttg |
9691294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 312 - 462
Target Start/End: Complemental strand, 9805704 - 9805554
Alignment:
| Q |
312 |
tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatc--atttgggtatgatga |
408 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| |||||| | ||||| | | || ||||||| |
|
|
| T |
9805704 |
tttccttcgccgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaataattgttgaattagaaattc---atgatga |
9805608 |
T |
|
| Q |
409 |
agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaa |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
9805607 |
agaaattaatcatattagggtatgatactgagttagtgataatttagggttaaa |
9805554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 22242275 - 22242195
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
22242275 |
ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacttagagtt |
22242195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 6610584 - 6610547
Alignment:
| Q |
5 |
ggtagataattcttaaaacaaataagaaatagatctag |
42 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6610584 |
ggtaaataattcttaaaacaaataagaaatagatctag |
6610547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 6623538 - 6623575
Alignment:
| Q |
5 |
ggtagataattcttaaaacaaataagaaatagatctag |
42 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6623538 |
ggtaaataattcttaaaacaaataagaaatagatctag |
6623575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 41552453 - 41552416
Alignment:
| Q |
5 |
ggtagataattcttaaaacaaataagaaatagatctag |
42 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41552453 |
ggtaaataattcttaaaacaaataagaaatagatctag |
41552416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Complemental strand, 55045630 - 55045054
Alignment:
| Q |
188 |
atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
287 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55045630 |
atttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
55045531 |
T |
|
| Q |
288 |
tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
387 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55045530 |
tcaacggttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
55045431 |
T |
|
| Q |
388 |
gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55045430 |
gaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
55045331 |
T |
|
| Q |
488 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55045330 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
55045231 |
T |
|
| Q |
588 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55045230 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
55045131 |
T |
|
| Q |
688 |
aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
764 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55045130 |
aaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
55045054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 68 - 188
Target Start/End: Complemental strand, 55045690 - 55045567
Alignment:
| Q |
68 |
gtgtctcacctctct--ctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacag |
165 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55045690 |
gtgtctcacctctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacag |
55045591 |
T |
|
| Q |
166 |
ctt-attagctctctcccaaacaa |
188 |
Q |
| |
|
||| |||||||||||||| ||||| |
|
|
| T |
55045590 |
cttaattagctctctccccaacaa |
55045567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 312 - 538
Target Start/End: Complemental strand, 13557893 - 13557671
Alignment:
| Q |
312 |
tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaa--atcatttgggtatgatga |
408 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| |||||| | ||||| || | || ||||||| |
|
|
| T |
13557893 |
tttctgtcgccgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgttgaattataaattc---atgatga |
13557797 |
T |
|
| Q |
409 |
agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| | ||||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
13557796 |
agaaattaatcatattagggtatgatactgagttagtgagaatttagggttaaatga----tgatagtatttagttatttagttcataattgagttaaaa |
13557701 |
T |
|
| Q |
509 |
tctctgttatttgctactgtttgattgttg |
538 |
Q |
| |
|
||| |||||||||||||||| |||||||| |
|
|
| T |
13557700 |
tctatgttatttgctactgtcagattgttg |
13557671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 55045752 - 55045715
Alignment:
| Q |
5 |
ggtagataattcttaaaacaaataagaaatagatctag |
42 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
55045752 |
ggtaaataattcttaaaacaaataagaaatagatctag |
55045715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Original strand, 19145443 - 19146019
Alignment:
| Q |
188 |
atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
287 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19145443 |
atttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
19145542 |
T |
|
| Q |
288 |
tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19145543 |
tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
19145642 |
T |
|
| Q |
388 |
gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19145643 |
gaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
19145742 |
T |
|
| Q |
488 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19145743 |
tagttcataattaagttaaaatctctgttatttgctattgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
19145842 |
T |
|
| Q |
588 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19145843 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
19145942 |
T |
|
| Q |
688 |
aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
764 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19145943 |
aaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
19146019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 188 - 764
Target Start/End: Original strand, 23672779 - 23673355
Alignment:
| Q |
188 |
atttcctctgaggcctccatctatccctcaaccgcgacaacttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
287 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23672779 |
atttcctctgaggcctccatctctccctcaaccgcgacagcttaattagctctctccccaacaaatacgatcaaaagcaactgcgatctccttctgcgat |
23672878 |
T |
|
| Q |
288 |
tcaacagttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
387 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23672879 |
tcaacggttggcgttttgtcaaagtttccgtcgccgaatctctccgttgaaggttatgttttctcgaatcttgtatttgatgaaggttaaaatttatttt |
23672978 |
T |
|
| Q |
388 |
gaaatcatttgggtatgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23672979 |
gaaatcatttgggtatgatgaagaaattaatcatattaggatatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtt |
23673078 |
T |
|
| Q |
488 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23673079 |
tagttcataattaagttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttga |
23673178 |
T |
|
| Q |
588 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23673179 |
tttgttggtaattgcaaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtcctatattgttagt |
23673278 |
T |
|
| Q |
688 |
aaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
764 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23673279 |
aaaaaatcttaagctttccccaatttttttagtttgattgtggttgttcctctaaatgttatcacatagagttagtg |
23673355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 19145394 - 19145506
Alignment:
| Q |
77 |
ctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagctt-attagct |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19145394 |
ctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacagcttaattagct |
19145493 |
T |
|
| Q |
176 |
ctctcccaaacaa |
188 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
19145494 |
ctctccccaacaa |
19145506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 23672730 - 23672842
Alignment:
| Q |
77 |
ctctctctctacgagagtgaatcctgctttctccatccctctctccgccattttctccgaggcctccatctctccctcaaccgcgacagctt-attagct |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23672730 |
ctctctctctacgagagtgaatcctgctttctccatccctctctccgccatttcctctgaggcctccatctctccctcaaccgcgacagcttaattagct |
23672829 |
T |
|
| Q |
176 |
ctctcccaaacaa |
188 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
23672830 |
ctctccccaacaa |
23672842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 409 - 576
Target Start/End: Complemental strand, 17229679 - 17229513
Alignment:
| Q |
409 |
agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa |
508 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||| |||||||| || | | |||||| ||||| |||||| |||||||| ||||||| |
|
|
| T |
17229679 |
agaaattaatcatattagggaatgatactgattttgtgagaattatgggttaattgaaacctaatagtaattagaagtttagctcataattttgttaaaa |
17229580 |
T |
|
| Q |
509 |
tc-tctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttg |
576 |
Q |
| |
|
|| ||||||| | || ||| | |||||||| || |||||||||||| ||||||||||| ||||||| |
|
|
| T |
17229579 |
tcttctgttacat--tattgtcttattgttgccttttgggttgttgtctattaagatgttatgttgttg |
17229513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 19145321 - 19145358
Alignment:
| Q |
5 |
ggtagataattcttaaaacaaataagaaatagatctag |
42 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19145321 |
ggtaaataattcttaaaacaaataagaaatagatctag |
19145358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 23672657 - 23672694
Alignment:
| Q |
5 |
ggtagataattcttaaaacaaataagaaatagatctag |
42 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23672657 |
ggtaaataattcttaaaacaaataagaaatagatctag |
23672694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 117; Significance: 3e-59; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 402 - 674
Target Start/End: Complemental strand, 40985 - 40713
Alignment:
| Q |
402 |
atgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaa |
501 |
Q |
| |
|
||||| ||||||| ||||| |||||| ||||||||||||||||||| || |||| |||||| || |||||||||||||| | ||||| |||||||||| |
|
|
| T |
40985 |
atgatcaagaaatcaatcaaattaggttatgatactgatttagtgagaactttgagttaaatgaaacttgatagtatttaaaagtttacttcataattat |
40886 |
T |
|
| Q |
502 |
gttaaaatctctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttgctactatttgatttgttggtaattg |
601 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||||| ||| | |||| | ||||||||| | ||||||| |||| | | ||||||||||||| | |
|
|
| T |
40885 |
cttaaaatttctgttatttgctactgtctgatatttgcattttggctcgttgcctattaagatgctatgttgttgttactgtcttatttgttggtaatcg |
40786 |
T |
|
| Q |
602 |
caaatgggtctggaatgaaaatttatgttgcttaagttaagtcattctttagttgggttgtgccaaacatgtc |
674 |
Q |
| |
|
||||||||| ||| |||| ||||| ||||| ||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
40785 |
caaatgggtttgggatgataatttgtgttggttaagttaagtcattctttagttggtttgtgtcaaacatgtc |
40713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 100; Significance: 5e-49; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 312 - 542
Target Start/End: Complemental strand, 116029 - 115800
Alignment:
| Q |
312 |
tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatcatttgggtatgatgaag |
410 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||||| |||| ||||||||||||| |||||| |||||| ||| | ||| || ||||||||| |
|
|
| T |
116029 |
tttccgtcgccgaatctcttcgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaata-attgtttaattataaattcatgatgaag |
115931 |
T |
|
| Q |
411 |
aaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatc |
510 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| |||| |||||||||||||||| |||||||||| |
|
|
| T |
115930 |
aaattaatcatattagggtatgatactgagttagtgagaatttagggttaaatgaagcttgatagta-ttagttgtttagttcataattgagttaaaatc |
115832 |
T |
|
| Q |
511 |
tctgttatttgctactgtttgattgttgcatt |
542 |
Q |
| |
|
| | |||||||||||||| ||||||||||||| |
|
|
| T |
115831 |
tatattatttgctactgtctgattgttgcatt |
115800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 115769 - 115689
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
115769 |
ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacgtagagtt |
115689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 312 - 542
Target Start/End: Original strand, 22043166 - 22043395
Alignment:
| Q |
312 |
tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatcatttgggtatgatgaag |
410 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||| |||| ||||||||||||||||||||| ||| | ||||| ||| | ||||| ||| |
|
|
| T |
22043166 |
tttccgtcgccgaatctctctgttaaaggtgatgtttatctcaaatcttgtatttgatgaaggtaaaa--taatttttgaattagaaattcatgataaag |
22043263 |
T |
|
| Q |
411 |
aaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatc |
510 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
22043264 |
aaattaatcatattagggtatgatacttacttagtgagaatttagggttaaatgaagcttgatagtatttagttgtttagttcataattgagttaaaatc |
22043363 |
T |
|
| Q |
511 |
tctgttatttgctactgtttgattgttgcatt |
542 |
Q |
| |
|
| |||||||| |||| || ||||||||||||| |
|
|
| T |
22043364 |
tatgttattttctaccgtctgattgttgcatt |
22043395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Original strand, 22043426 - 22043506
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
22043426 |
ttgttagtacaaaatcataagttttccccaaattttgtagtttgattgtggttgttcctctaaatgatatcacgtagagtt |
22043506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 511
Target Start/End: Complemental strand, 22879447 - 22879350
Alignment:
| Q |
409 |
agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa |
508 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||| |||| || ||||| |||| |||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
22879447 |
agaaattaatcatat-----tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaa |
22879353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 511
Target Start/End: Complemental strand, 22897567 - 22897470
Alignment:
| Q |
409 |
agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa |
508 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||| |||| || ||||| |||| |||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
22897567 |
agaaattaatcatat-----tatgatattgattttgtgagaattatgagttaattgaagcctgatagtatttagaagtttaggtcataattttgttaaaa |
22897473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 3e-47; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 312 - 542
Target Start/End: Original strand, 44353545 - 44353774
Alignment:
| Q |
312 |
tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatcatttgggtatgatgaag |
410 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||| |||| ||||||||||||||||||||| ||| | ||||| ||| | ||||| ||| |
|
|
| T |
44353545 |
tttccgtcgccgaatctctctgttaaaggtgatgtttatctcaaatcttgtatttgatgaaggtaaaa--taatttttgaattagaaattcatgataaag |
44353642 |
T |
|
| Q |
411 |
aaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatc |
510 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
44353643 |
aaattaatcatattagggtatgatacttacttagtgagaatttagggttaaatgaagcttgatagtatttagttgtttagttcataattgagttaaaatc |
44353742 |
T |
|
| Q |
511 |
tctgttatttgctactgtttgattgttgcatt |
542 |
Q |
| |
|
| |||||||| |||| || ||||||||||||| |
|
|
| T |
44353743 |
tatgttattttctaccgtctgattgttgcatt |
44353774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 409 - 576
Target Start/End: Complemental strand, 198324 - 198158
Alignment:
| Q |
409 |
agaaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||| |||||||| || | |||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
198324 |
agaaattaatcatattagggtatgatactgattttgtgagaattatgggttaattgaaacctgatagtatttagaagtttaggtcataattttgttaaaa |
198225 |
T |
|
| Q |
509 |
tc-tctgttatttgctactgtttgattgttgcattatgggttgttgtcaattaagatgttgcgttgttg |
576 |
Q |
| |
|
|| ||| ||| | |||||| | |||||||| || |||||||||||| ||||||||||| ||||||| |
|
|
| T |
198224 |
tcttctattacat--tactgtcttattgttgccttttgggttgttgtctattaagatgttatgttgttg |
198158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Original strand, 44353805 - 44353885
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
44353805 |
ttgttagtacaaaatcataagttttccccaaattttgtagtttgattgtggttgttcctctaaatgatatcacgtagagtt |
44353885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 95; Significance: 5e-46; HSPs: 2)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 312 - 542
Target Start/End: Complemental strand, 30483 - 30257
Alignment:
| Q |
312 |
tttccgtcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaatttattttgaaatcatttgggtatgatgaag |
410 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||| |||||| | ||||| | | ||||||||| |
|
|
| T |
30483 |
tttccgtcgccgaatctctccgttaaaggtgatgtttatctcaaatcttgtatttggtgaagggtaaaataattgttgaatt-agaaaatcatgatgaag |
30385 |
T |
|
| Q |
411 |
aaattaatcatattagggtatgatactgatttagtgataattttgggttaaacaaagcttgatagtatttagatgtttagttcataattaagttaaaatc |
510 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| |||||||| | ||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
30384 |
aaattaatcatattagggtatgatactgagttagtgagaatttagggttaaatga----tgatagtatttagttgtttagttcataattgagttaaaatc |
30289 |
T |
|
| Q |
511 |
tctgttatttgctactgtttgattgttgcatt |
542 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| |
|
|
| T |
30288 |
tatgttatttgctactgtctgattgttgcatt |
30257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 30226 - 30146
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
||||||||| |||||| |||| |||||| || |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
30226 |
ttgttagtacaaaatcataagttttccctaatttttgtagtttgattgtggttgttcctctaaatgatatcacgtagagtt |
30146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 678 - 760
Target Start/End: Original strand, 13975 - 14057
Alignment:
| Q |
678 |
tattgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13975 |
tattgttagtaaaaaatcataagttttccccaaaatttttagtttgattgtggttgttcctctaaatgttatcacatagagtt |
14057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 2503812 - 2503753
Alignment:
| Q |
403 |
tgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaaa |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
2503812 |
tgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttagggttaaa |
2503753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 403 - 461
Target Start/End: Original strand, 2499711 - 2499769
Alignment:
| Q |
403 |
tgatgaagaaattaatcatattagggtatgatactgatttagtgataattttgggttaa |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
2499711 |
tgatgaagaaattaatcatattagggtatgatactgagttagtgagaatttagggttaa |
2499769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 31397624 - 31397544
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
31397624 |
ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttcctctaaatgatatcacttagagtt |
31397544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 680 - 760
Target Start/End: Original strand, 2499855 - 2499935
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
2499855 |
ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttactctaaatgatatcacgtagagtt |
2499935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 680 - 760
Target Start/End: Complemental strand, 2503668 - 2503588
Alignment:
| Q |
680 |
ttgttagtaaaaaatcttaagctttccccaannnnnnnagtttgattgtggttgttcctctaaatgttatcacatagagtt |
760 |
Q |
| |
|
||||||||| |||||| |||| ||||||||| |||||||||||||||||| ||||||||| |||||| ||||||| |
|
|
| T |
2503668 |
ttgttagtacaaaatcataagttttccccaatttttgtagtttgattgtggttgttactctaaatgatatcacgtagagtt |
2503588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 438
Target Start/End: Complemental strand, 2503753 - 2503720
Alignment:
| Q |
405 |
atgaagaaattaatcatattagggtatgatactg |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
2503753 |
atgaagaaattaatcatattagggtatgatactg |
2503720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 2499626 - 2499689
Alignment:
| Q |
318 |
tcgccgaatctctccgttgaaggttatgttt-tctcgaatcttgtatttgatgaaggttaaaat |
380 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||| |||| ||||||||||||| |||||| |||||| |
|
|
| T |
2499626 |
tcgccgaatctctcagttaaaggtgatgtttatctcaaatcttgtatttggtgaaggctaaaat |
2499689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 437
Target Start/End: Original strand, 2499771 - 2499802
Alignment:
| Q |
406 |
tgaagaaattaatcatattagggtatgatact |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2499771 |
tgaagaaattaatcatattagggtatgatact |
2499802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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