View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_low_21 (Length: 358)
Name: NF2739_low_21
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 1694916 - 1695250
Alignment:
| Q |
17 |
aattagactatgcaatataaaattgtgctaatataatatatgcaggacaaaacttgccttaccaccaaaacaaaccacagaacaatcaatagtgacccaa |
116 |
Q |
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| T |
1694916 |
aattagactatgcaatataaaattgtgctaatataatatatgcaggacaaaacttgccttaccaccaaaacaaaccacagaacaatcaatagtgacccaa |
1695015 |
T |
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| Q |
117 |
atggatcatgccaatgcatattctttcccatactttgattgttggagtaactctacatcaacattatttaccgaaaagagtaaagaatgtgaacctatag |
216 |
Q |
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| T |
1695016 |
atggatcatgccaatgcatattctttcccatactttgattgttggagtaactctacatcaacattatttaccgaaaagagtaaagaatgtgaacctatag |
1695115 |
T |
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| Q |
217 |
ttgagatgcctgcatcacctgaacttgaaagcacagaattgattgatgatgaaaagatgtattatgattatgttgttgagaatgatgaagacattgagga |
316 |
Q |
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| T |
1695116 |
ttgagatgcctgcatcacctgaacttgaaagcacagaattgattgatgatgaaaagatgtattatgattatgttgttgagaatgatgaagacattgagga |
1695215 |
T |
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| Q |
317 |
tatgatgacactcaacctcagtatttgtaattctt |
351 |
Q |
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| T |
1695216 |
tatgatgacactcaacctcagtattggtaattctt |
1695250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 41920857 - 41921073
Alignment:
| Q |
17 |
aattagactatgcaatataaaattgtgctaatataa---tatatgcaggacaaaacttgccttaccaccaaaacaaaccacagaacaatcaatagtg--- |
110 |
Q |
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| T |
41920857 |
aattagactatgcaatatcaaaatgtggtaatatatatgtatatgcaggacaaaactcgccttaccaccaaaatcaaccacagatcaatcaattgtagca |
41920956 |
T |
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| Q |
111 |
acccaaatggatcatgccaatgcatattctttcccatactttgattgttggagtaactctacatcaacattatttaccgaaaagagtaaagaatgtgaac |
210 |
Q |
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| T |
41920957 |
acccaaatggatcat------------tgtttcccatactctgattattggagcaattctacatcaacattatttactaaagaaagtaaagaatgtgaac |
41921044 |
T |
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| Q |
211 |
ctatagttgagatgcctgcatcacctgaa |
239 |
Q |
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| T |
41921045 |
ctatagttgagatgcccgcatcacctgaa |
41921073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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