View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_low_23 (Length: 354)
Name: NF2739_low_23
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 108 - 347
Target Start/End: Original strand, 11116518 - 11116756
Alignment:
| Q |
108 |
acatgtatagaaaatggtatctgaaattagannnnnnnnaggttaagtatgtgtagaaggtgaatgatgggtttttaaatgttgttactttgccttgtag |
207 |
Q |
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| T |
11116518 |
acatgtatagaaaatggtatctgaaattagatttttttc-ggttaagtatgtgtagaaggtgaatgatgggtttttaaatgttgttactttgccttgtag |
11116616 |
T |
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| Q |
208 |
cagtgaaattttcaatttttgaagccggattttaatgaaagaaattttctagggctgtttataattgtgatcccaataataatgtgagaaaactacgtaa |
307 |
Q |
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| T |
11116617 |
cagtgaaattttcaatttttgaagccggattttaatgaaagaaattttctagggctgtttataattgtgatcccactaataatgtgagaaaactacgtaa |
11116716 |
T |
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| Q |
308 |
ttcagtgttatcttatgcaaaggtggtcgtgttcatttca |
347 |
Q |
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| T |
11116717 |
ttcagtgttatcgtatgcaaaggtggtcgtgttgatttca |
11116756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 11116424 - 11116456
Alignment:
| Q |
13 |
tcatcagtaacgttgttcagaatcgcaagtaag |
45 |
Q |
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| T |
11116424 |
tcatctgtaacgttgttcagaatcgcaagtaag |
11116456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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