View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2739_low_25 (Length: 314)

Name: NF2739_low_25
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2739_low_25
NF2739_low_25
[»] chr5 (7 HSPs)
chr5 (19-314)||(34232359-34232654)
chr5 (26-301)||(41713127-41713402)
chr5 (33-261)||(41571629-41571857)
chr5 (24-307)||(34240109-34240392)
chr5 (26-259)||(42129131-42129364)
chr5 (24-260)||(42118007-42118243)
chr5 (62-259)||(42123782-42123979)
[»] chr2 (2 HSPs)
chr2 (62-287)||(12248744-12248969)
chr2 (24-111)||(11994136-11994223)
[»] chr6 (2 HSPs)
chr6 (62-189)||(25522713-25522840)
chr6 (62-174)||(24141113-24141225)
[»] chr3 (1 HSPs)
chr3 (24-155)||(8523352-8523483)
[»] chr4 (1 HSPs)
chr4 (62-174)||(11118427-11118539)


Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 34232654 - 34232359
Alignment:
Q  19 ctatatggttgccattgagattcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232654 ctatatggttgccattgagattcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagac 34232555  T
Q  119 ttgaagggatgataaattagcaagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgac 218  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34232554 ttgtagggatgataaattagcaagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaaatcgaagtgatttcatactgcaaatcgac 34232455  T
Q  219 aaagagatatcaccttccagtaagttagaactaagatcaagactaccaagctggtcaacattccttgagatttggtctattgaagtgaagcaattt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34232454 aaagagatatcaccttccagtaagttagaactaagatcaagactaccaagctgatcaacattccttgagatttggtctattgaagtgaagcaattt 34232359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 301
Target Start/End: Complemental strand, 41713402 - 41713127
Alignment:
Q  26 gttgccattgagattcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagg 125  Q
    |||||||| |||||| ||| |  |||| ||||||| |||||| |||||||||||||||| |||||||||| | ||||||||||||||||| |||| ||||    
T  41713402 gttgccatagagatttagagtatgaagctcactgtcctttgaaaagttacttggcaaagtgccataaaatttgttcatttgtagatccaaaacttcaagg 41713303  T
Q  126 gatgataaattagcaagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagaga 225  Q
     ||||||||||||||||| ||||||||||| |||| |||||||||||||  ||||||||||||| ||  |||||  ||||| ||||||| |||| | |||    
T  41713302 tatgataaattagcaagacattgtggaatggtaccagtcaatttgttgtttgccaagttgagaaatcccagtgaactcatattgcaaattgacacaaaga 41713203  T
Q  226 tatcaccttccagtaagttagaactaagatcaagactaccaagctggtcaacattccttgagatttggtctattga 301  Q
    | |||||    ||||||||| |||| |||||||| | ||| ||||| | |  ||||||||||||||  ||||||||    
T  41713202 tttcaccacgtagtaagttataacttagatcaaggccaccgagctgataattattccttgagatttcttctattga 41713127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 33 - 261
Target Start/End: Complemental strand, 41571857 - 41571629
Alignment:
Q  33 ttgagattcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgata 132  Q
    |||| ||||||| | |||||||||| ||||||||| ||||||||||| |||| |||||||||| | |||||||||| |||||| ||||||||||||||||    
T  41571857 ttgaaattcagagtacgaaggtcacagtactttgaaaagttacttggtaaagtgccataaaatttgttcatttgtaaatccaaaacttgaagggatgata 41571758  T
Q  133 aattagcaagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcacc 232  Q
    | || |||||| | ||||||||| | || |||||||||||||| ||||||||||| | | |||||||  |  || ||||||| ||| ||||||| |||||    
T  41571757 agtttgcaagacaatgtggaatggtgcctgtcaatttgttgtgtgccaagttgagcaattgaagtgaagttctattgcaaattgacgaagagatgtcacc 41571658  T
Q  233 ttccagtaagttagaactaagatcaagac 261  Q
      | | ||||||| |||||||||||||||    
T  41571657 ggctaataagttaaaactaagatcaagac 41571629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 24 - 307
Target Start/End: Complemental strand, 34240392 - 34240109
Alignment:
Q  24 tggttgccattgagattcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaa 123  Q
    |||||| |||||||||||||| |   ||| | |||| ||||||| |||||| | ||||||| |||||||||  | ||||||||||||||||| | |||||    
T  34240392 tggttgtcattgagattcagagtaataagtttactggactttgaaaagttattaggcaaagtgccataaaagttgttcatttgtagatccaaaatttgaa 34240293  T
Q  124 gggatgataaattagcaagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaaga 223  Q
    |||||| ||||||||||||| ||||||||||| |||| || || ||||||||  |||||||||||| |  ||| ||  ||| | ||||||| |||| |||    
T  34240292 gggatggtaaattagcaagacattgtggaatgttacctgtgaaattgttgtgtcccaagttgagaaattcaagggaactcaaattgcaaattgacacaga 34240193  T
Q  224 gatatcaccttccagtaagttagaactaagatcaagactaccaagctggtcaacattccttgagatttggtctattgaagtgaa 307  Q
    ||  | |||  | ||||||||| |||||||||||||   ||| |||||||||   ||||||||||||||||||||||| |||||    
T  34240192 gaggttaccaacaagtaagttaaaactaagatcaaggtcaccgagctggtcactgttccttgagatttggtctattgatgtgaa 34240109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 259
Target Start/End: Original strand, 42129131 - 42129364
Alignment:
Q  26 gttgccattgagattcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagg 125  Q
    |||||||| |||||| ||| || |||| |||| ||||| ||| ||||||||||||||||  |||||||||||||||||||| | |||||| |||||||||    
T  42129131 gttgccatggagatttagagtctgaagctcacagtactctgaaaagttacttggcaaagttccataaaatctattcatttgcaaatccaaaacttgaagg 42129230  T
Q  126 gatgataaattagcaagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagaga 225  Q
     | ||| ||||||||||| |||||||||||||| | ||||| |  ||||| ||||||||||| | | |||||||  ||| | ||||||| |||  |||||    
T  42129231 aacgatgaattagcaagacattgtggaatgatatctgtcaaatgattgtgtgccaagttgagtaattgaagtgaactcaaattgcaaattgactcagaga 42129330  T
Q  226 tatcaccttccagtaagttagaactaagatcaag 259  Q
      |||||  ||||||||||| |||||||||||||    
T  42129331 ggtcaccagccagtaagttaaaactaagatcaag 42129364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 42118007 - 42118243
Alignment:
Q  24 tggttgccattgagattcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaa 123  Q
    |||||||||| |||||| ||| || ||||  ||| || || ||| ||||||||||||||||  |||||||||||||||||||| | |||||| |||||||    
T  42118007 tggttgccatggagatttagagtctgaagcacacagtcctctgaaaagttacttggcaaagttccataaaatctattcatttgcaaatccaaaacttgaa 42118106  T
Q  124 gggatgataaattagcaagatattgtggaatgataccggtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaaga 223  Q
    ||  |||| ||||||||||| |||||||||||||  | |||||||  ||||| ||||||||||| | |  ||||||  ||| | ||||||| |||  |||    
T  42118107 ggattgatgaattagcaagacattgtggaatgatgtctgtcaattgattgtgtgccaagttgagtagtttaagtgaactcaaattgcaaattgactcaga 42118206  T
Q  224 gatatcaccttccagtaagttagaactaagatcaaga 260  Q
    ||  |||||  ||| ||||||| ||||||||||||||    
T  42118207 gaggtcaccaaccactaagttaaaactaagatcaaga 42118243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 62 - 259
Target Start/End: Original strand, 42123782 - 42123979
Alignment:
Q  62 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 161  Q
    |||||| ||||||||||||||||  ||||||||  | ||||||||||||| ||| ||||||||||||| | | | ||||| | ||||||||||||||||     
T  42123782 ctttgaaaagttacttggcaaagtaccataaaacatgttcatttgtagattcaaaacttgaagggatggtgattcagcaaaacattgtggaatgatacca 42123881  T
Q  162 gtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagatcaag 259  Q
    ||||| | |||||   |||||||||||| | |||||||  ||||| ||||||  | ||||| ||| ||||| | |||||| |||  ||||||||||||    
T  42123882 gtcaaatcgttgtaacccaagttgagaaattgaagtgaactcatattgcaaactgccaaagggatttcaccattcagtaaattatgactaagatcaag 42123979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 62 - 287
Target Start/End: Original strand, 12248744 - 12248969
Alignment:
Q  62 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 161  Q
    ||||||||||||||||||||||| ||||| |||| | ||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||     
T  12248744 ctttgagaagttacttggcaaagtgccatgaaatttgttcatttgtagattcaaaacttgaagggatgataaatcagcaagacattgtggaatgatacct 12248843  T
Q  162 gtcaatttgttgtgcgccaagttgagaattcgaagtgatttcatactgcaaatcgacaaagagatatcaccttccagtaagttagaactaagatcaagac 261  Q
    |||||||  |||||  ||| ||||||  || |||||||  ||||  ||||||| || | |||||  |||||  | ||||||||| ||||||||||||| |    
T  12248844 gtcaattgattgtgttccaggttgagtgtttgaagtgaactcatgttgcaaattgatacagagaggtcaccagctagtaagttaaaactaagatcaaggc 12248943  T
Q  262 taccaagctggtcaacattccttgag 287  Q
     ||| ||||||| || ||||||||||    
T  12248944 caccgagctggttaatattccttgag 12248969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 11994223 - 11994136
Alignment:
Q  24 tggttgccattgagattcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagat 111  Q
    |||||||||| |||||||||| ||  |||  |||| | ||||||||||||||||||||||| ||||| | || | |||||||||||||    
T  11994223 tggttgccatagagattcagagtctcaagtgcactctcctttgagaagttacttggcaaagtgccatgacatgtgttcatttgtagat 11994136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 25522840 - 25522713
Alignment:
Q  62 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 161  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||| | | | ||||||| ||||||||||||||||     
T  25522840 ctttgaaaagttacttggcaaagtgccatgaaatctattcatttgtagattcaaaacttgaagggatgttgattcagcaagacattgtggaatgatacca 25522741  T
Q  162 gtcaatttgttgtgcgccaagttgagaa 189  Q
    ||||| |||||||   ||||||||||||    
T  25522740 gtcaaattgttgtatcccaagttgagaa 25522713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 24141113 - 24141225
Alignment:
Q  62 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 161  Q
    |||||| |||||||||||||||| ||||| |||| | || |||||||||| ||| ||| ||||||||| | ||| || |||| |||||||||||||||||    
T  24141113 ctttgaaaagttacttggcaaagtgccatgaaatgtgttgatttgtagattcaaaactcgaagggatggtgaatcagaaagacattgtggaatgataccg 24141212  T
Q  162 gtcaatttgttgt 174  Q
    ||||| |||||||    
T  24141213 gtcaaattgttgt 24141225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 8523352 - 8523483
Alignment:
Q  24 tggttgccattgagattcagactccgaaggtcactgtactttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaa 123  Q
    |||||||||| |||||||||| ||  ||| ||||| |  ||||| ||||||||||||||||  |||| |||| | ||||||||||||||||| |||| ||    
T  8523352 tggttgccatagagattcagagtctcaagttcactttcttttgaaaagttacttggcaaagttccatgaaatttgttcatttgtagatccaaaacttcaa 8523451  T
Q  124 gggatgataaattagcaagatattgtggaatg 155  Q
    || ||||||||||||||||| |||||||||||    
T  8523452 ggtatgataaattagcaagacattgtggaatg 8523483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 11118427 - 11118539
Alignment:
Q  62 ctttgagaagttacttggcaaagcgccataaaatctattcatttgtagatccaagacttgaagggatgataaattagcaagatattgtggaatgataccg 161  Q
    |||||| |||||||| ||||||| ||||| |||| | ||||||||||||| ||| || | |||| ||| | | | ||||||| |||||||||||| |||     
T  11118427 ctttgaaaagttactaggcaaagtgccatgaaatttgttcatttgtagattcaaaacataaaggaatggtgattcagcaagacattgtggaatgacacca 11118526  T
Q  162 gtcaatttgttgt 174  Q
    ||||| |||||||    
T  11118527 gtcaaattgttgt 11118539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University