View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_low_27 (Length: 298)
Name: NF2739_low_27
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 1695312 - 1695609
Alignment:
| Q |
1 |
tttcaaagatatgtgataattctttccaagagtttgaccatgacatgactgcaccaacatctttagttgcattacatccaaatgctacaatcaatcgttt |
100 |
Q |
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| T |
1695312 |
tttcaaagatatgtgataattctttccaagagtttgaccatgacatgactgcaccaacatctttagttgcattacatccaaatgctacaatcaatcgttt |
1695411 |
T |
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| Q |
101 |
atcaaaaatgaaaaatgctagccgcctgaaaactgagcgcttggtgtaagtttctcactttcctatattcttatgttatttctttatttgcatcgttcaa |
200 |
Q |
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| T |
1695412 |
atcaaaaatgaaaaatgctagccgcctgaaaactgagcgtttagtgtaagtttctcactttcctatattcttatgttaattctttatttgcatcgttcaa |
1695511 |
T |
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| Q |
201 |
taatatgaaattatttgcaactttattgtcttgttaacatgctaacccatttggtttggtctgacgatattgacttggaatcttggagtctctcatta |
298 |
Q |
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| T |
1695512 |
taatatgaaattatttgcaactttattgtcttgttaacatgctaacccatttggattggtctgatgatattgacttgggatcttggagtctctcatta |
1695609 |
T |
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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 41921241 - 41921403
Alignment:
| Q |
17 |
taattctttccaagagtttgaccatgacatgactgcaccaacatctttagttgcattacatccaaatgctacaatcaatcgtttatcaaaaatgaaaaat |
116 |
Q |
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||||||||| ||||||||||||||| | | | ||| || ||||||||||||||| |||||||||||||||| || || ||||||||||||||||||| |
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| T |
41921241 |
taattcttttgaagagtttgaccatggcgtaaatgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaat |
41921340 |
T |
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| Q |
117 |
gctagccgcctgaaaactgagcgcttggtgtaagtttctcactttcctatattcttatgttat |
179 |
Q |
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| T |
41921341 |
gctagtcgcttgaaaactgagcgcacagtgtaagtttctcactttcctatattcttatgttat |
41921403 |
T |
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