View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_low_33 (Length: 244)
Name: NF2739_low_33
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 13245524 - 13245660
Alignment:
| Q |
4 |
aagaatatagcggactttagaaagttatgtcgaaaacaaattcgagattttggtaataacacttcacacattttggaatcaattaccgattaattcttat |
103 |
Q |
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| T |
13245524 |
aagaaaatagcggactttagaaagttatgtcgaaaacaaattcgagattttagtaataatactttacacattttggaatcaattacgaattaattcttat |
13245623 |
T |
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| Q |
104 |
atggtcagaggagtttggatataccatttagacacac |
140 |
Q |
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| T |
13245624 |
atggttagaggagtttggatacaccatttagacacac |
13245660 |
T |
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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 13245727 - 13245764
Alignment:
| Q |
207 |
gatgtatttttgtgtgttctaatgtgttattactcacc |
244 |
Q |
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| T |
13245727 |
gatgtatttttgtgtgttctaatgtgttactactcacc |
13245764 |
T |
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