View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_low_35 (Length: 237)
Name: NF2739_low_35
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 25965263 - 25965060
Alignment:
| Q |
18 |
ctgtataccagtcgctaatattcttctattttgtgagtactacaaatttaagtgcaaaaaactcagatggcaagacatttggactctgggatgtcagtac |
117 |
Q |
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| T |
25965263 |
ctgtataccagtcgctaatattcttctattttgtgagtactacaaatttaagtgcaaaaaactcagatggcaagacatttggactctgggatgtcagtac |
25965164 |
T |
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| Q |
118 |
aatggcattcacttgtgttgtagtaaccgtcaacttgagattacttatgatttgtaactcaatcacaagatggcactacattagtgttggtggaagcata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25965163 |
aatggcattcacttgtgttgtagtaaccgtcaacttgagattacttatgatttgtaactcaatcacaagatggcactacattagtgttggtggaagcata |
25965064 |
T |
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| Q |
218 |
ttag |
221 |
Q |
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|||| |
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| T |
25965063 |
ttag |
25965060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 16237152 - 16236954
Alignment:
| Q |
23 |
taccagtcgctaatattcttctattttgtgagtactacaaatttaagtgcaaaaaactcagatggcaagacatttggactctgggatgtcagtacaatgg |
122 |
Q |
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|||||||| |||||||||||||||||||||||| || ||| ||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||| |||| |
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| T |
16237152 |
taccagtctctaatattcttctattttgtgagttcttcaagtttaagtgctaaaaattcagatggcaagatatttggactctgggatgttagtactatgg |
16237053 |
T |
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| Q |
123 |
cattcacttgtgttgtagtaaccgtcaacttgagattacttatgatttgtaactcaatcacaagatggcactacattagtgttggtggaagcatattag |
221 |
Q |
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| T |
16237052 |
ccttcacatgtgttgtagtaactgttaactttcgacttctgatgaactgtaattcaatcacaagatggcactatattagtgttggtggaagtatattag |
16236954 |
T |
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