View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2739_low_5 (Length: 699)

Name: NF2739_low_5
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2739_low_5
NF2739_low_5
[»] chr2 (12 HSPs)
chr2 (54-497)||(8277183-8277641)
chr2 (54-237)||(11573807-11573997)
chr2 (54-233)||(31133288-31133467)
chr2 (62-193)||(20927513-20927644)
chr2 (62-199)||(35000438-35000575)
chr2 (75-195)||(22787796-22787916)
chr2 (85-193)||(9829375-9829483)
chr2 (633-682)||(8277784-8277833)
chr2 (245-308)||(8273259-8273322)
chr2 (245-290)||(22727694-22727739)
chr2 (250-292)||(22787991-22788033)
chr2 (245-302)||(11712978-11713035)
[»] chr6 (13 HSPs)
chr6 (54-308)||(31522345-31522599)
chr6 (54-235)||(32275543-32275724)
chr6 (78-193)||(13543678-13543792)
chr6 (245-307)||(32274199-32274261)
chr6 (245-306)||(32275772-32275833)
chr6 (245-305)||(25400850-25400910)
chr6 (54-165)||(4321530-4321633)
chr6 (245-308)||(14153368-14153431)
chr6 (241-294)||(4319112-4319165)
chr6 (633-676)||(31277404-31277447)
chr6 (245-308)||(35060896-35060959)
chr6 (249-294)||(7203956-7204001)
chr6 (277-305)||(17436053-17436081)
[»] chr4 (26 HSPs)
chr4 (54-235)||(23283337-23283518)
chr4 (54-235)||(36499082-36499263)
chr4 (66-235)||(55523901-55524070)
chr4 (54-211)||(24972590-24972746)
chr4 (54-235)||(45246753-45246934)
chr4 (86-235)||(12586361-12586510)
chr4 (65-193)||(22182152-22182280)
chr4 (54-193)||(33990762-33990901)
chr4 (54-193)||(50008797-50008936)
chr4 (85-193)||(43210023-43210129)
chr4 (85-193)||(1938580-1938688)
chr4 (85-193)||(41418911-41419019)
chr4 (94-193)||(156886-156985)
chr4 (54-193)||(50336192-50336331)
chr4 (244-308)||(34235704-34235768)
chr4 (245-308)||(51719775-51719838)
chr4 (249-306)||(54208196-54208253)
chr4 (245-308)||(33164506-33164569)
chr4 (245-308)||(36501866-36501929)
chr4 (85-193)||(12656515-12656630)
chr4 (245-294)||(24974147-24974196)
chr4 (85-180)||(6599373-6599469)
chr4 (245-305)||(45246982-45247042)
chr4 (245-308)||(36172179-36172242)
chr4 (167-205)||(29348901-29348938)
chr4 (245-305)||(23283231-23283291)
[»] chr5 (18 HSPs)
chr5 (54-305)||(763105-763355)
chr5 (64-235)||(30491525-30491697)
chr5 (54-210)||(34017399-34017555)
chr5 (56-211)||(38739536-38739690)
chr5 (54-254)||(5504874-5505068)
chr5 (98-234)||(33143948-33144085)
chr5 (85-193)||(20887698-20887806)
chr5 (54-193)||(32910585-32910724)
chr5 (62-152)||(15235047-15235137)
chr5 (108-194)||(16109318-16109403)
chr5 (245-295)||(28677913-28677963)
chr5 (85-193)||(29195858-29195966)
chr5 (245-305)||(34017620-34017680)
chr5 (241-304)||(34016020-34016083)
chr5 (245-306)||(6706036-6706097)
chr5 (115-193)||(8736470-8736550)
chr5 (259-304)||(17636362-17636407)
chr5 (245-293)||(5506692-5506740)
[»] chr3 (22 HSPs)
chr3 (54-235)||(7666689-7666870)
chr3 (54-235)||(35995262-35995443)
chr3 (54-237)||(35063090-35063272)
chr3 (54-227)||(19866917-19867090)
chr3 (54-211)||(34086559-34086718)
chr3 (54-174)||(39649705-39649825)
chr3 (85-193)||(14443751-14443859)
chr3 (85-193)||(54335654-54335762)
chr3 (54-193)||(30933795-30933934)
chr3 (85-193)||(11916930-11917038)
chr3 (54-193)||(20518049-20518188)
chr3 (86-193)||(30528497-30528604)
chr3 (54-193)||(53767224-53767363)
chr3 (241-308)||(15040695-15040762)
chr3 (249-308)||(4969889-4969948)
chr3 (245-308)||(6162683-6162746)
chr3 (245-308)||(53814562-53814625)
chr3 (249-308)||(30533234-30533293)
chr3 (258-290)||(2652950-2652982)
chr3 (272-308)||(13843621-13843657)
chr3 (245-305)||(35062984-35063044)
chr3 (274-302)||(35106011-35106039)
[»] scaffold1063 (1 HSPs)
scaffold1063 (54-234)||(1601-1782)
[»] chr1 (19 HSPs)
chr1 (54-235)||(33402866-33403047)
chr1 (54-235)||(35577246-35577426)
chr1 (54-235)||(48025714-48025894)
chr1 (54-211)||(25817598-25817755)
chr1 (54-194)||(3368236-3368376)
chr1 (85-193)||(16315158-16315266)
chr1 (85-193)||(12063560-12063668)
chr1 (54-193)||(23941635-23941774)
chr1 (245-308)||(28475983-28476046)
chr1 (89-193)||(30704342-30704446)
chr1 (245-308)||(28446531-28446594)
chr1 (245-306)||(45688324-45688385)
chr1 (86-129)||(18426397-18426440)
chr1 (241-308)||(28474806-28474873)
chr1 (245-308)||(33617658-33617721)
chr1 (245-295)||(35563532-35563582)
chr1 (275-305)||(49033761-49033791)
chr1 (241-295)||(50065505-50065559)
chr1 (277-305)||(28442939-28442967)
[»] scaffold0037 (1 HSPs)
scaffold0037 (54-235)||(38109-38289)
[»] chr8 (15 HSPs)
chr8 (54-235)||(34276368-34276548)
chr8 (85-193)||(14189780-14189890)
chr8 (85-193)||(24626064-24626172)
chr8 (158-235)||(33228293-33228370)
chr8 (54-194)||(2807157-2807296)
chr8 (62-164)||(32075054-32075156)
chr8 (245-308)||(5967238-5967301)
chr8 (62-145)||(20532099-20532182)
chr8 (78-193)||(13868202-13868319)
chr8 (241-305)||(31762258-31762322)
chr8 (146-193)||(20534374-20534421)
chr8 (245-308)||(33220788-33220851)
chr8 (245-304)||(34279562-34279621)
chr8 (249-308)||(37687317-37687376)
chr8 (122-193)||(41601120-41601191)
[»] chr7 (16 HSPs)
chr7 (54-214)||(2369658-2369818)
chr7 (54-225)||(4452382-4452553)
chr7 (115-225)||(4452765-4452873)
chr7 (54-193)||(44222009-44222148)
chr7 (54-193)||(23941343-23941482)
chr7 (85-193)||(4278602-4278711)
chr7 (154-235)||(10526856-10526937)
chr7 (54-193)||(11356339-11356478)
chr7 (123-193)||(13070509-13070579)
chr7 (245-308)||(5173-5236)
chr7 (85-143)||(12868664-12868722)
chr7 (86-193)||(31730907-31731015)
chr7 (245-306)||(38386190-38386251)
chr7 (62-126)||(23562298-23562362)
chr7 (277-306)||(5060864-5060893)
chr7 (244-304)||(20379668-20379728)
[»] scaffold0599 (1 HSPs)
scaffold0599 (85-193)||(8681-8789)
[»] scaffold1050 (1 HSPs)
scaffold1050 (91-193)||(2061-2163)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 54 - 497
Target Start/End: Original strand, 8277183 - 8277641
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  8277183 gttttgacgatacattacctgttctttgatacttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaat 8277282  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaataatgatt------agtg-- 245  Q
    ||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| || ||      |||       
T  8277283 tttgcatttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctactgggttttgaacaaaaatagtgcttgacgcaagttaa 8277382  T
Q  246 catg-------ttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggtttgcagaattcttatcatagcttacttggt 338  Q
    ||||       ||||||| |||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||    
T  8277383 catgcgctacattaacttgcgtaagggcatttcggtcatttactttgggaatgagcggaaccatttgggtgtgcagaattcttctcgtagcttacttggt 8277482  T
Q  339 gacgaagcgatactaagaagtcttaaacagaaagtataagtagacgttccgtgttaaactcaatcacacagcccaaacccaaacaaaccctaatttcaat 438  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8277483 gacgaagcgatacgaagaagtcttaaacagaaagtataagtagacgttccgtgttaaactcaatcacacaacccaaacccaaacaaaccctaatttcaat 8277582  T
Q  439 tctttataaactctcacacaaaccccaatttcacttcgattcgatccgatcatccatta 497  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8277583 tctttataaactctcacacaaacctcaatttcacttcgattcgatccgatcatccatta 8277641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 11573997 - 11573807
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  11573997 gttttgacggtacattacctgttctttgatgcttgatgagcatagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaat 11573898  T
Q  154 t-------tcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaataat 237  Q
    |       || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||| ||||||||    
T  11573897 ttcgcacatcgcacttttggggtttttggaggtggagggaaagaaaaaatggagctttgtggttgtctgctgggttttgaacgaaaataat 11573807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 54 - 233
Target Start/End: Complemental strand, 31133467 - 31133288
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| |||||||| | ||||||||| |||  |||||||||||||| ||||||||||||||||||  |||||||     
T  31133467 gttttgacggtacattacctgttctttgatgcttgatgaacatagaaacttgttttataacgatttgcaataatttggaatgaagattttgacccaaaaa 31133368  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaa 233  Q
    ||| |||||||  |||||||||||||||||||| | ||||||||||||||||||||||||||| || |||||||| ||||    
T  31133367 ttctcactttttgggtttttggaggtggagggataaaaaaaatggagctttgtggttgcctactgggttttgaacgaaaa 31133288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 20927513 - 20927644
Alignment:
Q  62 gatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacact 161  Q
    |||||||||| || | |||||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||  || |||||||  ||||    
T  20927513 gatacattacctgatatttgatgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttggaatgaagattttgacctaaaattttgcact 20927612  T
Q  162 tttgaggtttttggaggtggagggaaagaaaa 193  Q
    |||  |||||||| ||||||||||||||||||    
T  20927613 ttttgggtttttgaaggtggagggaaagaaaa 20927644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 62 - 199
Target Start/End: Complemental strand, 35000575 - 35000438
Alignment:
Q  62 gatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacact 161  Q
    |||||||||| ||||||||||| ||||||||| ||| | ||||  |||||  |||||||||||||||||||| |||||||||  ||||||| ||| ||||    
T  35000575 gatacattacctgttctttgatgcttgatgagtgtatagacttgcttcctggcgatttgcaatgatttggaacgaagattttgacccaaaagttcgcact 35000476  T
Q  162 tttgaggtttttggaggtggagggaaagaaaaaatgga 199  Q
    |||  ||||||| |||||||| ||||||||||||||||    
T  35000475 ttttgggtttttagaggtggaaggaaagaaaaaatgga 35000438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 22787796 - 22787916
Alignment:
Q  75 ttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttg 174  Q
    |||| |||| ||||||||||||||||||||  ||| | ||||||||||||||||| |||||||||||||  ||||||| ||| ||||||   ||||||||    
T  22787796 ttctatgatgcttgatgagcgtagaaacttacttcatgacgatttgcaatgatttagaatgaagattttgacccaaaaattcgcactttatgggtttttg 22787895  T
Q  175 gaggtggagggaaagaaaaaa 195  Q
    |||||||||||||||||||||    
T  22787896 gaggtggagggaaagaaaaaa 22787916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 9829375 - 9829483
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||| |||| ||||||  ||||||| ||| |||||||   ||||||| |||||||||    
T  9829375 cttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaattcgcactttttgagtttttgaaggtggagg 9829474  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  9829475 gaaagaaaa 9829483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 633 - 682
Target Start/End: Original strand, 8277784 - 8277833
Alignment:
Q  633 aatcatgtctaaggcttccttcaagactcaacatcctttcggtaatttat 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8277784 aatcatgtctaaggcttccttcaagactcaacatcctttcggtaatttat 8277833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 8273322 - 8273259
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | |||||||| |||||| |||||||||||||||||||||| | ||||||||||    
T  8273322 gcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggt 8273259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 22727739 - 22727694
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaat 290  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||    
T  22727739 gcatgttaactcacgtaggggtatttgggtcatttactttgggaat 22727694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 22787991 - 22788033
Alignment:
Q  250 ttaacttacgtaggggtatttcgatcatttactttgggaatga 292  Q
    |||||| |||||||||||||| | |||||||||||||||||||    
T  22787991 ttaactcacgtaggggtattttggtcatttactttgggaatga 22788033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 11713035 - 11712978
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccat 302  Q
    |||||||||| |||||||||| |||| |  | ||||||||||||||||||| ||||||    
T  11713035 gcatgttaacatacgtaggggcattttggacttttactttgggaatgagcgaaaccat 11712978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 6e-82; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 54 - 308
Target Start/End: Original strand, 31522345 - 31522599
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||| ||||||||    
T  31522345 gttttgacggtacattacctgttctttgatgcttgatgagcatagaaacttgtttcctgacgatttgcaatgatttggaattaagatttttacccaaaat 31522444  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaataatgattagtgcatgttaa 253  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | | || |||||||| |||||| |  |||  ||| |||||    
T  31522445 ttcgcacttttggggtttttggaggtggagggaaagaaaaaatggagctatgtggttgcttgctgggttttgaacgaaaatagtacttaacgcaagttaa 31522544  T
Q  254 cttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  31522545 cttgcgtaggggcatttcggtcatttactttgggaatgagcggaaccatttgggt 31522599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 32275543 - 32275724
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| ||||||||||||||||| || |||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  32275543 gttttgacggtacattacatgttctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaaagatttggaatgaagatttttacccaaaat 32275642  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| ||||||    
T  32275643 ttcgcacttttggggtttttggaggtggaggaaaagaaaaaatggagctttgtggttgcctgctggattttgaacgaaaata 32275724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 13543678 - 13543792
Alignment:
Q  78 tttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaattt-cacacttttgaggtttttgga 176  Q
    |||||| |||||||||||||||| |||  |||||| ||||||||||||||||||||| ||||||||  || |||| || ||| |||||| ||||||||||    
T  13543678 tttgatgcttgatgagcgtagaagcttgcttcctaccgatttgcaatgatttggaataaagattttgaccaaaaaattgcac-cttttg-ggtttttgga 13543775  T
Q  177 ggtggagggaaagaaaa 193  Q
    |||||||||||||||||    
T  13543776 ggtggagggaaagaaaa 13543792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 32274261 - 32274199
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttggg 307  Q
    |||||||||| | |||||||| ||||||||||||||||||||||||||||| | |||||||||    
T  32274261 gcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttggg 32274199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 32275772 - 32275833
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgg 306  Q
    |||||||||||| | |||||| |||||  |||||||||||||||||||||||||||||||||    
T  32275772 gcatgttaacttgcataggggcatttcagtcatttactttgggaatgagcggaaccatttgg 32275833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 25400910 - 25400850
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttg 305  Q
    |||| |||| |||||||||||||||| || |||||||||||| ||||||||||||||||||    
T  25400910 gcatcttaagttacgtaggggtattttgaacatttactttggaaatgagcggaaccatttg 25400850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 4321530 - 4321633
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| | |||||||| |||||||||||  |||||||||||||||||||||  || ||        ||||||||||||||||||||||| ||||||||    
T  4321530 gttttgatggtacattacctgttctttgatgattgatgagcgtagaaacttttacccaaa--------aatgatttggaatgaagatttttacccaaaat 4321621  T
Q  154 ttcacacttttg 165  Q
    ||  ||||||||    
T  4321622 tttgcacttttg 4321633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 14153431 - 14153368
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | ||||||||||||| | |||||||||||||||||||||  || |||||||||    
T  14153431 gcatgttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggt 14153368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 4319165 - 4319112
Alignment:
Q  241 tagtgcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagc 294  Q
    |||||||||||||| | |||||||| |||||||||||||||||| | |||||||    
T  4319165 tagtgcatgttaacatgcgtaggggcatttcgatcatttactttagtaatgagc 4319112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 31277447 - 31277404
Alignment:
Q  633 aatcatgtctaaggcttccttcaagactcaacatcctttcggta 676  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||||    
T  31277447 aatcatgtctaagccttccttcaagactcaacatcatttaggta 31277404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 35060896 - 35060959
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | |||||||| |||| |  |||||||||||| ||||||||||| |||||||||    
T  35060896 gcatgttaacatgcgtaggggcattttggacatttactttggaaatgagcggaatcatttgggt 35060959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 7203956 - 7204001
Alignment:
Q  249 gttaacttacgtaggggtatttcgatcatttactttgggaatgagc 294  Q
    |||||| | ||||||||||||| |||||||||||||||||| ||||    
T  7203956 gttaacatgcgtaggggtattttgatcatttactttgggaacgagc 7204001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 277 - 305
Target Start/End: Complemental strand, 17436081 - 17436053
Alignment:
Q  277 tttactttgggaatgagcggaaccatttg 305  Q
    |||||||||||||||||||||||||||||    
T  17436081 tttactttgggaatgagcggaaccatttg 17436053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 23283518 - 23283337
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  23283518 gttttgacggtacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttagaatgaagatttttacccaaaat 23283419  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    ||  |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||    
T  23283418 tttgcacttttggggtttttggaggtggagggaaagaaaaaatggagctttatggttgcatactggattttgaacgaaaata 23283337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 36499263 - 36499082
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| || ||||| ||||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  36499263 gttttgacggtaaattacctgttctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaat 36499164  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||||| ||||||    
T  36499163 ttcgcacttttggggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctgcttggttttgaacgaaaata 36499082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 66 - 235
Target Start/End: Complemental strand, 55524070 - 55523901
Alignment:
Q  66 cattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttg 165  Q
    |||||| | ||||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||    
T  55524070 cattacatattctttgatgcttgatgagcgtagaaacttgtttcctgacgatttacaatgatttggaatgaagatttttacccaaaatttcgcacttttg 55523971  T
Q  166 aggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||    
T  55523970 gggtttttgcaggtggagggaaagaaaaaatggagctttgtggttgcctactgggttttgaacgaaaata 55523901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 24972746 - 24972590
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| |||| |||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  24972746 gttttgacggtacattacctgttatttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaat 24972647  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttg 211  Q
    ||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  24972646 ttcgcacttttggggtttttggaggtggagggaaaga-aaaatggagctttgtggttg 24972590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 45246753 - 45246934
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| |||||||||||| ||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||    
T  45246753 gttttgacggtacattacctgttctttgatgcttgatgagcgtggaaacttgtttcttgacgatttgcaatgatttggaatgaagatttttacccaaaat 45246852  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    |||||||||||   |||||||||||||||||||||| |||| | ||||||||||||||||| | ||||||||||| ||||||    
T  45246853 ttcacacttttagagtttttggaggtggagggaaaggaaaagtcgagctttgtggttgcctgctggattttgaacgaaaata 45246934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 12586510 - 12586361
Alignment:
Q  86 ttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggaggg 185  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||  |||||||| |||||||||||||||||||    
T  12586510 ttgatgagcgtagaaacttatttcctgacgatttgcaatgatttggaatgaagatttttacccaaaattttgcacttttggggtttttggaggtggaggg 12586411  T
Q  186 aaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    ||||||||||||||| ||| ||||||| | | || |||||||| ||||||    
T  12586410 aaagaaaaaatggagttttatggttgcatgctgggttttgaacgaaaata 12586361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 65 - 193
Target Start/End: Original strand, 22182152 - 22182280
Alignment:
Q  65 acattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacactttt 164  Q
    ||||||| || | |||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||  || ||||  |  |||||||    
T  22182152 acattacctgatatttgatgcttgatgagcgtagaaacttgcttcttaacgatttgcaatgatttggaatgaagattttgacctaaaaaattgcactttt 22182251  T
Q  165 gaggtttttggaggtggagggaaagaaaa 193  Q
      |||||||||||||||||||||||||||    
T  22182252 tgggtttttggaggtggagggaaagaaaa 22182280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 33990901 - 33990762
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| |||||| | |||| | ||||||||||||||||||||  ||| | ||||||||||||||||||| |||| ||||||  |||||||     
T  33990901 gttttgatgatacaatacttgatatttggtgcttgatgagcgtagaaacttgattcatgacgatttgcaatgatttgggatgaggattttgacccaaaaa 33990802  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
     || |||||||  |||||||| ||||||| ||||||||||    
T  33990801 atcgcactttttgggtttttgaaggtggaaggaaagaaaa 33990762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 50008797 - 50008936
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||| | ||||||||||||||||||||  ||||| ||||||||||||||||||| |||| ||||||  |||||||     
T  50008797 gttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaa 50008896  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
     || |||||||  |||||||| |||| |||||||||||||    
T  50008897 atcgcacttttttggtttttgaaggtcgagggaaagaaaa 50008936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 43210023 - 43210129
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||| |||| ||||||  |||||||  || |||||||  |||||||| |||||||||    
T  43210023 cttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttt--ggtttttgaaggtggagg 43210120  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  43210121 gaaagaaaa 43210129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 1938688 - 1938580
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    |||||||||| |||||||||| || || ||||||||||||||||||| |||| ||||||  |||||||  || |||||||  |||||||| |||||||||    
T  1938688 cttgatgagcatagaaactttctttctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaaggtggagg 1938589  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  1938588 gaaagaaaa 1938580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 41419019 - 41418911
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||| |||| ||||||  |||||||  || |||||||  |||||||| |||||||||    
T  41419019 cttgatgagcgtagaaacttgcgtcctaacgatttgtaatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaaggtggagg 41418920  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  41418919 gaaagaaaa 41418911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 156886 - 156985
Alignment:
Q  94 cgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
    |||||||||||  ||||| ||||||||||||||||||| |||| ||||||  ||||||| ||| |||||||  |||||||| ||||||||||||||||||    
T  156886 cgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtggagggaaagaaaa 156985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 50336192 - 50336331
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||| | |||||||||| |||||||||  ||| | ||||||||||||| ||||| |||| ||||||  |||||||     
T  50336192 gttttgatgatacaatacctgatatttggtgcttgatgagcatagaaacttgcttcatgacgatttgcaatggtttgggatgaggattttgacccaaaaa 50336291  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
     || |||||||  |||||||| ||||||||||||||||||    
T  50336292 atcgcactttttgggtttttgaaggtggagggaaagaaaa 50336331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 34235704 - 34235768
Alignment:
Q  244 tgcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    ||||||||||| | |||| ||| |||||| ||||||||||| |||||||||||||||||||||||    
T  34235704 tgcatgttaacatgcgtatgggcatttcggtcatttactttaggaatgagcggaaccatttgggt 34235768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 51719775 - 51719838
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||||||||||||||||||||| | ||||||||||| ||| |||| | ||||||||||    
T  51719775 gcatgttaacttacgtaggggtatttcggttatttactttggaaataagcgaatccatttgggt 51719838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 54208253 - 54208196
Alignment:
Q  249 gttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgg 306  Q
    ||||||||  |||||||||||| |||||||||||||||||||||||  ||||||||||    
T  54208253 gttaacttgagtaggggtattttgatcatttactttgggaatgagcaaaaccatttgg 54208196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 33164506 - 33164569
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | |||||||| |||| |  ||||||||||| ||||||||||||||||||||||    
T  33164506 gcatgttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggt 33164569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 36501866 - 36501929
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||| ||| | |||||||| ||||||||||||||||||||||||||||| | |||| |||||    
T  36501866 gcatgtcaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatctgggt 36501929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 12656630 - 12656515
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaa-------atttcacacttttgaggtttttggag 177  Q
    ||||||||||||||||||||  || || ||||||||||||||||||| || | ||||||  ||||||       | ||| |||||||  |||||||| ||    
T  12656630 cttgatgagcgtagaaacttgctttctgacgatttgcaatgatttgggataaggattttgacccaaaaaatcgcacttcgcactttttgggtttttgaag 12656531  T
Q  178 gtggagggaaagaaaa 193  Q
    ||||||||||||||||    
T  12656530 gtggagggaaagaaaa 12656515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 24974147 - 24974196
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagc 294  Q
    |||||||||| | |||||||| |||||| |||||||||||||||||||||    
T  24974147 gcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagc 24974196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 6599373 - 6599469
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacactttt-gaggtttttggaggtg 180  Q
    |||||| ||| ||||||| |  ||||| |||| ||||||||||||| ||||||||||||| || |||| ||| || |||| | ||||||||||||||    
T  6599373 cttgataagcatagaaacctgcttcctgacgacttgcaatgatttgaaatgaagatttttaccaaaaaattcgcatttttgggggtttttggaggtg 6599469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 45246982 - 45247042
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttg 305  Q
    |||||||||| |||||||||  |||| ||||||||||||| | ||||| ||||||||||||    
T  45246982 gcatgttaacatacgtagggacattttgatcatttactttagaaatgaacggaaccatttg 45247042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 36172242 - 36172179
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| ||| ||||||||||| |  | ||||||||||||||||| ||||| ||||||||    
T  36172242 gcatgttaacatacataggggtattttggacttttactttgggaatgagtggaactatttgggt 36172179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 29348938 - 29348901
Alignment:
Q  167 ggtttttggaggtggagggaaagaaaaaatggagctttg 205  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29348938 ggtttttggaggtggagggaaaga-aaaatggagctttg 29348901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 23283291 - 23283231
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttg 305  Q
    |||||||||||| | |||||| |||||| ||||||||||||| ||| |||| ||| |||||    
T  23283291 gcatgttaacttgcataggggcatttcggtcatttactttggaaataagcgaaactatttg 23283231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 5e-64; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 54 - 305
Target Start/End: Original strand, 763105 - 763355
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| | ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  |||||||    
T  763105 gttttgacgctacattacctattctttgatgcttgatgagcgtagaaatttgtttcctaacgatttgcaatgatttggaatgaagatttttatccaaaat 763204  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaataat-gattagtgcatgtta 252  Q
    ||| |||||||| |  ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||| |  |||| |||| ||||    
T  763205 ttcgcacttttg-gaattttgaaggtggagggaaagaaaaaatggagctttgtggttgcctgctggattttgaacgaaaatagtacatta-tgcaagtta 763302  T
Q  253 acttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttg 305  Q
    |||| ||||  || |||||  | ||||| ||||||||||||||||||||||||    
T  763303 acttgcgtataggcatttcagttatttattttgggaatgagcggaaccatttg 763355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 64 - 235
Target Start/End: Original strand, 30491525 - 30491697
Alignment:
Q  64 tacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttt 163  Q
    |||||||| ||||||||||| |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||  | ||||||||| ||||||    
T  30491525 tacattacctgttctttgatgcttgatgagcgtagaaacttgtctcctgacgatttgcaatgatttggaatgaagattttgactcaaaatttcgcacttt 30491624  T
Q  164 t-gaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| ||||||    
T  30491625 tgggggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctgctgggttttgaacgaaaata 30491697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 54 - 210
Target Start/End: Original strand, 34017399 - 34017555
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  34017399 gttttgacgatacattacatgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttgaaatgaagatttttacccaaaat 34017498  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggtt 210  Q
    ||  ||||||||   ||||||||||||||| ||||||||||||||| ||||||||||    
T  34017499 tttgcacttttggaatttttggaggtggagtgaaagaaaaaatggaactttgtggtt 34017555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 56 - 211
Target Start/End: Complemental strand, 38739690 - 38739536
Alignment:
Q  56 tttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaattt 155  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||| ||| |||||| ||||||||||||||||| |||||||||||||  ||||||| ||    
T  38739690 tttgacggtacattacctgttctttgatgcttgatgagcgtagaa-cttgtttcctgacgatttgcaatgatttagaatgaagattttgacccaaaaatt 38739592  T
Q  156 cacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttg 211  Q
    | |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  38739591 ctcactttttgggtttttggaggtggagggaaagaaaaaatggagctttgtggttg 38739536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 54 - 254
Target Start/End: Complemental strand, 5505068 - 5504874
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| | |||||||| ||||||||||| |||||||||||||||||| | ||| || ||||||||||||||||    |||||||||||| ||||||||    
T  5505068 gttttgatggtacattacctgttctttgattcttgatgagcgtagaaacctgttttctgacgatttgcaatgatt----atgaagatttttacccaaaat 5504973  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaataatgattagtgcatgttaa 253  Q
    ||  ||||||||  ||||||||||||||||||||  ||||||||||||||||||||||  | | || |||||||| |||||| |  ||| ||||||||||    
T  5504972 tttgcacttttggagtttttggaggtggagggaa--aaaaaatggagctttgtggttgtttgctgggttttgaacgaaaatagtatttaatgcatgttaa 5504875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 33143948 - 33144085
Alignment:
Q  98 gaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagggaaag-aaaaaat 196  Q
    ||||||| ||| || |||||||||||||||||||||||||||||||  ||||||||||| || ||||| || |||||||||||||||||||| |||||||    
T  33143948 gaaacttgttttctgacgatttgcaatgatttggaatgaagattttcacccaaaatttcgcatttttgggggttttggaggtggagggaaagaaaaaaat 33144047  T
Q  197 ggagctttgtggttgcctacaggattttgaacaaaaat 234  Q
    |||| |||||||||| || | || |||||||| |||||    
T  33144048 ggagttttgtggttgtctgctgggttttgaaccaaaat 33144085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 20887698 - 20887806
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    |||||| |||||||||||||| ||||| ||||||||||||||||||| |||| ||||||  | |||||  || |||||||  |||||||| ||||| |||    
T  20887698 cttgataagcgtagaaactttcttcctgacgatttgcaatgatttgggatgaggattttgactcaaaaaatcccactttttgggtttttgaaggtgtagg 20887797  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  20887798 gaaagaaaa 20887806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 32910724 - 32910585
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||| | ||||||||| ||||||||||  ||| | ||||||||||||| ||||| ||||  |||||  |||||||     
T  32910724 gttttgatgatacaatacctgatatttggtgcttgatgagtgtagaaacttgcttcatgacgatttgcaatggtttgggatgagaattttgacccaaaaa 32910625  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
    ||| |||||||  |||||||| ||||||||||||||||||    
T  32910624 ttcgcactttttgggtttttgaaggtggagggaaagaaaa 32910585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 15235047 - 15235137
Alignment:
Q  62 gatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaa 152  Q
    ||||||||||||| | |||||| ||||||||| |||  |||||  || || |||||||||||||||||||||||||||||||  |||||||    
T  15235047 gatacattacttgatatttgatgcttgatgagtgtatgaacttgctttctgacgatttgcaatgatttggaatgaagattttgacccaaaa 15235137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 16109403 - 16109318
Alignment:
Q  108 tcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagggaaagaaaaa 194  Q
    |||| ||||||| |||| ||||||||||||||||||  |||||||  || |||||||  ||||||||||||||||||||||||||||    
T  16109403 tcctgacgattt-caataatttggaatgaagattttgacccaaaaaatcgcactttttgggtttttggaggtggagggaaagaaaaa 16109318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 28677963 - 28677913
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcg 295  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  28677963 gcatgttaacttacgtaggggtatttcggtcatttactttaggaatgagcg 28677913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 29195858 - 29195966
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||  || || ||||||||||||||||||| |||| ||| ||  || ||||  |  |||||||  |||||||| |||||||||    
T  29195858 cttgatgagcgtagaaacttgctttctgacgatttgcaatgatttgggatgaggatattgacctaaaaaattgcactttttgggtttttgaaggtggagg 29195957  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  29195958 gaaagaaaa 29195966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 34017620 - 34017680
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttg 305  Q
    ||||||| |||| ||||||||||||||| ||||||||||||  ||||||||||||||||||    
T  34017620 gcatgtttacttgcgtaggggtatttcggtcatttactttgaaaatgagcggaaccatttg 34017680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 34016083 - 34016020
Alignment:
Q  241 tagtgcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccattt 304  Q
    |||||||||||||| |  ||||||| |||||  |||||||||||||||||||||| | ||||||    
T  34016083 tagtgcatgttaacatgtgtaggggcatttcagtcatttactttgggaatgagcgaatccattt 34016020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 6706036 - 6706097
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgg 306  Q
    |||||||||| | |||||||| |||||  ||||||||||||| |||||||| | ||||||||    
T  6706036 gcatgttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccatttgg 6706097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 8736470 - 8736550
Alignment:
Q  115 gatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtg--gagggaaagaaaa 193  Q
    |||||||||||||||| ||||||||||||    ||||| ||  |||||||  ||||||||||||||  |||||||||||||    
T  8736470 gatttgcaatgatttgaaatgaagattttgattcaaaaatttgcactttttgggtttttggaggtggagagggaaagaaaa 8736550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 17636407 - 17636362
Alignment:
Q  259 gtaggggtatttcgatcatttactttgggaatgagcggaaccattt 304  Q
    ||||||||||||| |||||||| |||||||||||||| | ||||||    
T  17636407 gtaggggtatttcaatcatttattttgggaatgagcgaatccattt 17636362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 293
Target Start/End: Original strand, 5506692 - 5506740
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgag 293  Q
    |||||| ||| | |||||| | |||||||||||||||||||||||||||    
T  5506692 gcatgtcaacatgcgtaggagcatttcgatcatttactttgggaatgag 5506740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 8e-60; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 7666689 - 7666870
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||  || |||||    
T  7666689 gttttgacggtacattacatgttctttgatgcttgatgagcgtagaaacttatttcctgatgatttgcaatgatttggaatgaagattttacccaaaaat 7666788  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    ||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||||||| | || |||||||||||||||    
T  7666789 ttcgcactttttgggtttttggaggtggagggaaagaaaaaatggagcttagtggttgcctgctgggttttgaacaaaaata 7666870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 35995443 - 35995262
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| || | |||| |||||||     
T  35995443 gttttgacggtacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaataaaaaattttacccaaaaa 35995344  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| | || |||||||| ||||||    
T  35995343 ttcacacttttggggtttttggaggtggagggaaagaaaaaatggagctttatgattgcctgctgggttttgaacgaaaata 35995262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 35063272 - 35063090
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    |||||||| ||||||||| | |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| | ||||||||| ||||||||    
T  35063272 gttttgacaatacattacctattctttgatacttgatgagcgtagaaacttgtttc-tgacgatttgcaatgatttggattaaagatttttacccaaaat 35063174  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaataat 237  Q
    ||| |||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||| ||||||||    
T  35063173 ttcgcacttttgggatttttggaggtggagggaaagaaaaaatagagctttgtggttgcctgctgggttttgaacgaaaataat 35063090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 19867090 - 19866917
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| || |||| |||||||||||||||||||||||  ||||||||    
T  19867090 gttttgacgatacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctgacaatttacaatgatttggaatgaagattttcacccaaaat 19866991  T
Q  154 ttcacactttt-gaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaa 227  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | || |||||||    
T  19866990 ttcgcacttttggaggtttttggaggtggagggaaagaaaaaatggagc-ttgtggttgcctgctgggttttgaa 19866917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 54 - 211
Target Start/End: Original strand, 34086559 - 34086718
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgt--agaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaa 151  Q
    ||||||||| |||||||   |||||||||| ||| || |||||  |||||||| |||||| |||||||||||||||||||||||||||||||| ||||||    
T  34086559 gttttgacggtacattatccgttctttgatgcttaataagcgtgtagaaacttatttcctgacgatttgcaatgatttggaatgaagatttttacccaaa 34086658  T
Q  152 atttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttg 211  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34086659 atttcgcacttttggggtttttggaggtggagggaaagaaaaaatggagctttgtggttg 34086718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 54 - 174
Target Start/End: Original strand, 39649705 - 39649825
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| | |||||||| | ||||||||| ||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||    
T  39649705 gttttgatggtacattacctattctttgatgcttgatgagcgtagaaatttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaat 39649804  T
Q  154 ttcacacttttgaggtttttg 174  Q
    ||  ||||||||  |||||||    
T  39649805 tttgcacttttggagtttttg 39649825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 14443751 - 14443859
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||| |||| ||||||  || ||||  || |||||||  ||||||||||||||||||    
T  14443751 cttgatgagcgtagaaacttacttcctgacgatttgcaatgatttgggatgaggattttgaccgaaaaaatcgcactttttgggtttttggaggtggagg 14443850  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  14443851 gaaagaaaa 14443859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 54335762 - 54335654
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||| |||| ||||||  ||||||| ||  |||||||  |||||||| |||||||||    
T  54335762 cttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaatttgcactttttgggtttttgaaggtggagg 54335663  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  54335662 gaaagaaaa 54335654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 30933795 - 30933934
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||| | ||||||||||||||||||||  ||||| ||||||||||||||||||| |||| ||||||  |||||||     
T  30933795 gttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaa 30933894  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
     |  |||||||  |||||||| ||||||||||||||||||    
T  30933895 attgcactttttgggtttttgaaggtggagggaaagaaaa 30933934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 11917038 - 11916930
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||  ||||| ||||||||||| ||||||| |||| ||||||  ||||||| ||| |||||||  |||||||| |||||||||    
T  11917038 cttgatgagcgtagaaacttgcttcctgacgatttgcaaagatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtggagg 11916939  T
Q  185 gaaagaaaa 193  Q
    |||| ||||    
T  11916938 gaaaaaaaa 11916930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 20518049 - 20518188
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||| | ||||||||||||||||||||  ||| | ||||||| ||||| ||||| |||| ||||||  |||||||     
T  20518049 gttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcatgacgatttacaatgctttgggatgaggattttgacccaaaaa 20518148  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
    ||| |||||||  |||||||| ||||||||||||||||||    
T  20518149 ttcgcactttttgggtttttgaaggtggagggaaagaaaa 20518188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 30528604 - 30528497
Alignment:
Q  86 ttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggaggg 185  Q
    ||||||||  |||||||||  ||||| ||||||||||||||||| |||||||||||||   ||||||  || |||||||  |||||||||||||||||||    
T  30528604 ttgatgagtatagaaacttgcttcctgacgatttgcaatgatttagaatgaagattttgatccaaaaaatcgcactttttgggtttttggaggtggaggg 30528505  T
Q  186 aaagaaaa 193  Q
    ||||||||    
T  30528504 aaagaaaa 30528497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 53767363 - 53767224
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||| | ||||||||||||||||||||  ||| | ||||||||||||||||||| ||||  |||||  |||||||     
T  53767363 gttttgatgatacaatacatgatatttggtgcttgatgagcgtagaaacttgcttcatgacgatttgcaatgatttgggatgagaattttgacccaaaaa 53767264  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
     | ||||||||  |||||||| ||||||||||||||||||    
T  53767263 attacactttttgggtttttgaaggtggagggaaagaaaa 53767224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 15040762 - 15040695
Alignment:
Q  241 tagtgcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||||||| | |||||||| |||||  |||||||||||||||||||||| | ||||||||||    
T  15040762 tagtgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggt 15040695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 4969948 - 4969889
Alignment:
Q  249 gttaacttacgtaggggtattt-cgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    ||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  4969948 gttaactcacgtaggggtattttcga-cttttactttgggaatgagcggaaccatttgggt 4969889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 6162683 - 6162746
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | |||||||| |||| |  | ||||||||||||||||||||||||||||||||    
T  6162683 gcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggt 6162746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 53814562 - 53814625
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||| ||||| | |||||||| |||| |||||||||||||||||||||||| | ||||||||||    
T  53814562 gcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggt 53814625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 30533293 - 30533234
Alignment:
Q  249 gttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    ||||||| ||| ||||||||||    ||||||||||||||||||||| ||||||||||||    
T  30533293 gttaactcacgcaggggtatttgtgacatttactttgggaatgagcgaaaccatttgggt 30533234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 258 - 290
Target Start/End: Original strand, 2652950 - 2652982
Alignment:
Q  258 cgtaggggtatttcgatcatttactttgggaat 290  Q
    ||||||||||||| |||||||||||||||||||    
T  2652950 cgtaggggtattttgatcatttactttgggaat 2652982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 13843621 - 13843657
Alignment:
Q  272 gatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  13843621 gatcttttactttgggaatgagcgaaaccatttgggt 13843657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 35063044 - 35062984
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttg 305  Q
    |||||||||||| | ||||  ||||||| |||||||||||  ||||||||||| |||||||    
T  35063044 gcatgttaacttgcataggaatatttcggtcatttactttaagaatgagcggatccatttg 35062984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 274 - 302
Target Start/End: Original strand, 35106011 - 35106039
Alignment:
Q  274 tcatttactttgggaatgagcggaaccat 302  Q
    |||||||||||||||||||||||||||||    
T  35106011 tcatttactttgggaatgagcggaaccat 35106039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 54 - 234
Target Start/End: Complemental strand, 1782 - 1601
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||     
T  1782 gttttgacggtacattacatgttcttcgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaataaagatttttgcccaaaaa 1683  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaa-aaaatggagctttgtggttgcctacaggattttgaacaaaaat 234  Q
    ||| |||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||   ||||||||||| |||||    
T  1682 ttcgcacttttggggtttttggaggtggagggaaagaaaaaaatggagctttatggttgcctggcggattttgaacgaaaat 1601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 5e-55; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 33402866 - 33403047
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| ||| |||||||||||||||| |||||  | |||||||||||||||||||||||||||||| ||||||||    
T  33402866 gttttgacggtacattacctgttctttgatgcttaatgagcgtagaaacttgtttccggaagatttgcaatgatttggaatgaagatttttacccaaaat 33402965  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    ||| |||||||| ||||||| ||||||||| |||||||||||||||| ||| ||||||||| | ||||||||||| ||||||    
T  33402966 ttcgcacttttggggtttttagaggtggagcgaaagaaaaaatggagttttatggttgcctgctggattttgaacgaaaata 33403047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 35577246 - 35577426
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| || |||||    
T  35577246 gttttgacggtacattacctgttctttgatgcttgatgagcgtagaaacttgtttcctaacgatttgcaatgatttggaatgagtatttttaccaaaaat 35577345  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    ||| |||||||| |||||||||||||||| | |||||||||| |||||| ||||||||||| | || |||||||| ||||||    
T  35577346 ttcgcacttttggggtttttggaggtggacgaaaagaaaaaa-ggagctctgtggttgcctgctgggttttgaacgaaaata 35577426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 48025894 - 48025714
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||  |||||||| ||||||||||| |||||||||| ||||||||| |||| | | |||||||||||||||||||||||||||||| ||||||||    
T  48025894 gttttgacagtacattacctgttctttgatgcttgatgagcatagaaacttgtttcttgatgatttgcaatgatttggaatgaagatttttacccaaaat 48025795  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcct-acaggattttgaacaaaaata 235  Q
    ||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| || | ||| |||||||||||||||    
T  48025794 ttcgcacttttg-gggttttggaggtggagggaaagaaaaaatggagctttgtggttgtctgatagg-ttttgaacaaaaata 48025714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 25817755 - 25817598
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| |||||||| |||||| |||| ||||| ||||| ||||||||  ||  | ||||||||||||||||||||| |||||||||  |||||||     
T  25817755 gttttgacggtacattacctgttctatgatgcttgacgagcgcagaaacttgctttatgacgatttgcaatgatttggaacgaagattttgacccaaaaa 25817656  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttg 211  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  25817655 ttcacactttttgggtttttggaggtggagggaaagaaaaaatggagctgtgtggttg 25817598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 54 - 194
Target Start/End: Complemental strand, 3368376 - 3368236
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| ||||||||||||| | |||||| |||||| || ||||||||||  ||||| | ||||||||||||||  |||||||||||||  ||||||      
T  3368376 gttttgatgatacattacttgatgtttgatgcttgataagtgtagaaacttgcttcctgatgatttgcaatgattatgaatgaagattttgacccaaata 3368277  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaa 194  Q
     || |||||||  ||||||||||||||||||||||||||||    
T  3368276 atcgcactttttgggtttttggaggtggagggaaagaaaaa 3368236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 16315158 - 16315266
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||  ||||| ||||||||||||||||||| |||||||||||   ||||||  || |||||||  ||||| || |||||||||    
T  16315158 cttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaagattttgatccaaaaaatcgcactttttgggtttgtgaaggtggagg 16315257  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  16315258 gaaagaaaa 16315266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 12063668 - 12063560
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||| ||||||||||  ||||| ||||||||||||||||||| |||| ||||||  |||||||  ||||||||||  |||||||| |||  ||||    
T  12063668 cttgatgagtgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaaatcacactttttgggtttttgaaggaagagg 12063569  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  12063568 gaaagaaaa 12063560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 23941774 - 23941635
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||| | |||||||| |||||||||||  ||||| ||||||||||||||||||| |||| | ||||  |||||||     
T  23941774 gttttgatgatacaatacctgatatttggtgcttgatgaacgtagaaacttgcttcctgacgatttgcaatgatttgggatgagggttttgacccaaaaa 23941675  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
     |  |||||||  |||||||| ||||||||||||||||||    
T  23941674 attgcactttttgggtttttgaaggtggagggaaagaaaa 23941635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 28475983 - 28476046
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| |  ||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  28475983 gcatgttaacatgtgtaggggcatttcgatcatttactttgagaatgagcggaaccatttgggt 28476046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 30704342 - 30704446
Alignment:
Q  89 atgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagggaaa 188  Q
    ||||| ||||||||||  ||||| ||||||||||||||||||  ||||  |||||  |||||||  || |||||||  |||||||| |||||||||||||    
T  30704342 atgagtgtagaaacttgcttcctgacgatttgcaatgatttgagatgagaattttgacccaaaaagtcgcactttttgggtttttgaaggtggagggaaa 30704441  T
Q  189 gaaaa 193  Q
    |||||    
T  30704442 gaaaa 30704446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 28446531 - 28446594
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | |||||||| |||||  |||||||||||||||||||||| | ||||||||||    
T  28446531 gcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggt 28446594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 45688385 - 45688324
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgg 306  Q
    |||||||||| | |||||||| |||| || | |||||||||||||||||| |||||||||||    
T  45688385 gcatgttaacatgcgtaggggcattttgaacttttactttgggaatgagcagaaccatttgg 45688324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 18426397 - 18426440
Alignment:
Q  86 ttgatgagcgtagaaacttttttcctaacgatttgcaatgattt 129  Q
    |||||||||||||||||||  ||||| |||||||||||||||||    
T  18426397 ttgatgagcgtagaaacttgcttcctgacgatttgcaatgattt 18426440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 28474873 - 28474806
Alignment:
Q  241 tagtgcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||||||| | |||||||| |||||  ||||||| |||||||||||| | | ||||||||||    
T  28474873 tagtgcatgttaacatgcgtaggggcatttcagtcatttattttgggaatgagtgaatccatttgggt 28474806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 308
Target Start/End: Complemental strand, 33617721 - 33617658
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | | |||||| |||||| |||||||||||| ||||||||| | ||||||||||    
T  33617721 gcatgttaacatgcataggggcatttcggtcatttactttgagaatgagcgaatccatttgggt 33617658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 35563582 - 35563532
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcg 295  Q
    |||||||||| | |||||||| |||||  ||||||||||||||||||||||    
T  35563582 gcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcg 35563532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 305
Target Start/End: Original strand, 49033761 - 49033791
Alignment:
Q  275 catttactttgggaatgagcggaaccatttg 305  Q
    |||||||||||||||||||||||||||||||    
T  49033761 catttactttgggaatgagcggaaccatttg 49033791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 50065559 - 50065505
Alignment:
Q  241 tagtgcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcg 295  Q
    |||||||||||||| | || || || |||||| ||||||||||||||||||||||    
T  50065559 tagtgcatgttaacatgcgcagaggcatttcggtcatttactttgggaatgagcg 50065505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 277 - 305
Target Start/End: Complemental strand, 28442967 - 28442939
Alignment:
Q  277 tttactttgggaatgagcggaaccatttg 305  Q
    |||||||||||||||||||||||||||||    
T  28442967 tttactttgggaatgagcggaaccatttg 28442939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 38109 - 38289
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||  |||||||  ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||     
T  38109 gttttgactgtacattatatgttctttgatgcttgatgagcgtagaaacttgtttcctgacgatttgcaatgatttggaatgaagatttttacccaaaaa 38208  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    ||  |||||||  | ||||||||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||| ||||||    
T  38209 tttgcactttttggctttttggaggtggagggaaag-aaaaatggagctgtgtggttgcatactggattttgaacgaaaata 38289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 7e-48; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 34276548 - 34276368
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||||| ||||| || |||||||||||  |||||| |||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||||||    
T  34276548 gttttgacggtacatcacctgttctttgatggttgatgggcgtagaaacttgtttcatgacgatttgcaatgatttggaatgaagatttttacccaaaat 34276449  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    ||| | |||||| ||||||||||||||||||| || ||||||| ||||||||||||||||| | || |||||||| ||||||    
T  34276448 ttctctcttttggggtttttggaggtggaggggaa-aaaaaattgagctttgtggttgcctgctgggttttgaacgaaaata 34276368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 14189890 - 14189780
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggt--gga 182  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||  |||||||  ||||||||||   | ||||||||||  |||    
T  14189890 cttgatgagcgtagtaactttcttcctaacgatttgcaatgatttgaaatgaagattttgacccaaaaaatcacactttttgagattttggaggtaggga 14189791  T
Q  183 gggaaagaaaa 193  Q
    |||||||||||    
T  14189790 gggaaagaaaa 14189780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 24626064 - 24626172
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||  ||| | | |||||||||||||||||||||||||||||| |||||||  |  |||||||   ||||||||||||| |||    
T  24626064 cttgatgagcgtagaaacttgcttcatgatgatttgcaatgatttggaatgaagatttttacccaaaaaattgcactttttgtgtttttggaggtgcagg 24626163  T
Q  185 gaaagaaaa 193  Q
    |||||||||    
T  24626164 gaaagaaaa 24626172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 33228370 - 33228293
Alignment:
Q  158 cacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||||| ||||||    
T  33228370 cactttttgggtttttggaggtggaggaaaagaaaaaatggagctttgtggttgcctgctgggttttgaacgaaaata 33228293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 2807157 - 2807296
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||||||| |||||||||||  |||| |||||||  |||||  |||||||||||||||||||||||  ||||||||||||  |||||||     
T  2807157 gttttgatgatacattacctgttctttgatgtttgacgagcgtaagaacttgcttcctaacgatttgcaatgatttcaaatgaagattttgacccaaaaa 2807256  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaa 194  Q
     |   ||||||  || |||| ||||||||||||||||||||    
T  2807257 attgtactttt-tgggttttagaggtggagggaaagaaaaa 2807296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 32075156 - 32075054
Alignment:
Q  62 gatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacact 161  Q
    |||||||||| || | |||||| ||||||||||||||||||||  ||||| | ||||| ||||||||||| |||| ||||||  ||||||| ||||||||    
T  32075156 gatacattacctgatatttgatgcttgatgagcgtagaaacttgcttcctgatgatttacaatgatttgggatgaggattttgacccaaaaattcacact 32075057  T
Q  162 ttt 164  Q
    |||    
T  32075056 ttt 32075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 5967238 - 5967301
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | |||||||| ||||||||||||||||||||||||||||| | ||||||||||    
T  5967238 gcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggt 5967301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 20532099 - 20532182
Alignment:
Q  62 gatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttg 145  Q
    |||||||||| || | |||||| ||||||||||||||||||||  ||||  || |||||||||||||||||||||| |||||||    
T  20532099 gatacattacctggtatttgatgcttgatgagcgtagaaacttgcttccatacaatttgcaatgatttggaatgaaaatttttg 20532182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 13868202 - 13868319
Alignment:
Q  78 tttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggag 177  Q
    |||||| ||||||||| ||||||||||  ||||  |||||||||||||||||| |||||||| |||  ||||||| ||  |||||||   ||||||||||    
T  13868202 tttgatgcttgatgagtgtagaaacttacttccccacgatttgcaatgatttgaaatgaagaatttgacccaaaaatttgcactttttgagtttttggag 13868301  T
Q  178 gtg--gagggaaagaaaa 193  Q
    |||  |||||||||||||    
T  13868302 gtggagagggaaagaaaa 13868319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 31762322 - 31762258
Alignment:
Q  241 tagtgcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttg 305  Q
    |||||||||||||| | | ||||| ||||||| | |||||||||||||||||||| | |||||||    
T  31762322 tagtgcatgttaacatgcatagggatatttcgtttatttactttgggaatgagcgaatccatttg 31762258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 20534374 - 20534421
Alignment:
Q  146 cccaaaatttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
    ||||||||||| |||||||  |||||||| ||||||||||||||||||    
T  20534374 cccaaaatttcgcactttttgggtttttgaaggtggagggaaagaaaa 20534421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 33220788 - 33220851
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | |||||||| |||| || | ||||||||||||||||| | ||||||||||||    
T  33220788 gcatgttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggt 33220851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 304
Target Start/End: Original strand, 34279562 - 34279621
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccattt 304  Q
    |||||||||| |  ||||||| |||||||||||||||||| |||||||||| | ||||||    
T  34279562 gcatgttaacatgtgtaggggcatttcgatcatttactttaggaatgagcgaatccattt 34279621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 37687317 - 37687376
Alignment:
Q  249 gttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    ||||||| ||||| || ||||| |  |||||||||||| |||||||||||||||||||||    
T  37687317 gttaactcacgtaaggatattttggacatttactttggaaatgagcggaaccatttgggt 37687376  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 41601191 - 41601120
Alignment:
Q  122 aatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
    |||||||||| |||| ||||||  |||||||  || |||||||  |||||||| ||||||||||||||||||    
T  41601191 aatgatttgggatgaggattttgacccaaaaaatcgcactttttgggtttttgaaggtggagggaaagaaaa 41601120  T

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Target: chr7 (Bit Score: 97; Significance: 3e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 54 - 214
Target Start/End: Original strand, 2369658 - 2369818
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||||||| ||||||||||| ||||||||| ||||||||||  ||| | |||||||||||||||||||||||||||||||  |||||||     
T  2369658 gttttgaggatacattacctgttctttgatgcttgatgagtgtagaaacttgcttcatgacgatttgcaatgatttggaatgaagattttgacccaaaaa 2369757  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcct 214  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||| | |||||||||||    
T  2369758 ttcacactttttgggtttttagaggtggagggaaagaaaaaatggagttgtgtggttgcct 2369818  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 54 - 225
Target Start/End: Original strand, 4452382 - 4452553
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    |||||||  ||| ||||| ||||||||||| ||||||||  ||||||||||  ||||| | |||||||||| ||||||||||||||||||  |||||||     
T  4452382 gttttgagaatatattacctgttctttgatgcttgatgaatgtagaaacttgcttcctgatgatttgcaattatttggaatgaagattttgacccaaaaa 4452481  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttg 225  Q
    ||| |||||||  ||||||||||| |||||||||||||||||||||| | ||||||||||| | ||||||||    
T  4452482 ttcgcactttttgggtttttggagatggagggaaagaaaaaatggagttgtgtggttgcctgctggattttg 4452553  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 4452765 - 4452873
Alignment:
Q  115 gatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcct 214  Q
    |||||||||| ||||||||||||||||||  ||||||| ||  ||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  4452765 gatttgcaattatttggaatgaagattttgacccaaaaatttgcactttttaggtttttggaggtggagggaaagaaaaaatggag--ttgtggttgcct 4452862  T
Q  215 acaggattttg 225  Q
     | ||||||||    
T  4452863 gctggattttg 4452873  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 44222148 - 44222009
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||||| ||||||||||||||||||||  ||||| ||||||||||||||||||| |||| ||||||  |||||||     
T  44222148 gttttgatgatacaatacctgatatttgatgcttgatgagcgtagaaacttgcttcctgacgatttgcaatgatttgggatgaggattttgacccaaaaa 44222049  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
     || |||||||  |||||||| ||||||||||||||||||    
T  44222048 atcgcactttttgggtttttgaaggtggagggaaagaaaa 44222009  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 23941482 - 23941343
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||| | ||||||||||||||||||||  ||| | ||||||||||||||||||| |||| ||||||  || ||||     
T  23941482 gttttgatgatacaatacctgatatttggtgcttgatgagcgtagaaacttgcttcatgacgatttgcaatgatttgggatgaggattttgaccaaaaaa 23941383  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
    ||| |||||||  |||||||| ||||||||||||||||||    
T  23941382 ttcgcactttttgggtttttgaaggtggagggaaagaaaa 23941343  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 4278711 - 4278602
Alignment:
Q  85 cttgatgagcgtagaaacttt-tttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggag 183  Q
    ||||||||||||||||||||  |||||| ||||| ||||||||||||| |||| ||||||  || |||| ||| |||||||| |||||||| ||||||||    
T  4278711 cttgatgagcgtagaaacttactttcctgacgatgtgcaatgatttgggatgaggattttgaccaaaaaattctcacttttggggtttttgaaggtggag 4278612  T
Q  184 ggaaagaaaa 193  Q
    ||||||||||    
T  4278611 ggaaagaaaa 4278602  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 10526856 - 10526937
Alignment:
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaaaatggagctttgtggttgcctacaggattttgaacaaaaata 235  Q
    |||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| | || |||||| | ||||||    
T  10526856 ttcacactttttggatttttggaggtggagggaaagaaaaaatggagctttgtggttgcctgctgggttttgatcgaaaata 10526937  T

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Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 11356478 - 11356339
Alignment:
Q  54 gttttgacgatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaat 153  Q
    ||||||| |||||| ||| || | |||| | |||||||| |||||||||||  ||||| | ||||||||||||||||| ||||  |||||  |||||||     
T  11356478 gttttgatgatacaatacctgatatttggtgcttgatgaacgtagaaacttgcttcctgatgatttgcaatgatttgggatgagaattttgacccaaaaa 11356379  T
Q  154 ttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
     || |||||||  |||||||| ||||||||||||||||||    
T  11356378 atcgcactttttgggtttttgaaggtggagggaaagaaaa 11356339  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 13070509 - 13070579
Alignment:
Q  123 atgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagggaaagaaaa 193  Q
    |||||||||||||||||||||  |||||||  ||||||||||  |||||||||||||||||||||||||||    
T  13070509 atgatttggaatgaagattttgacccaaaaaatcacactttttgggtttttggaggtggagggaaagaaaa 13070579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 5173 - 5236
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgggt 308  Q
    |||||||||| | |||||||| |||||| |||||||||||||||||||||| | ||||||||||    
T  5173 gcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggt 5236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 12868722 - 12868664
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttt 143  Q
    ||||||||| ||||||||||  ||||| |||||||| ||||||||| ||||||||||||    
T  12868722 cttgatgagtgtagaaacttacttcctcacgatttgtaatgatttgaaatgaagatttt 12868664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 31731015 - 31730907
Alignment:
Q  86 ttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtg--gag 183  Q
    |||||||| ||||||||||  ||||| ||||||||||||||| || ||||||||| ||  |||| || ||| |||| ||  ||||||||||||||  |||    
T  31731015 ttgatgagtgtagaaacttgcttcctgacgatttgcaatgatatgaaatgaagatattgacccacaa-ttcgcactctttgggtttttggaggtggagag 31730917  T
Q  184 ggaaagaaaa 193  Q
    ||||||||||    
T  31730916 ggaaagaaaa 31730907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 38386251 - 38386190
Alignment:
Q  245 gcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccatttgg 306  Q
    |||||||||| | |||||||| ||||| |||||||||||||| |||||||| | ||||||||    
T  38386251 gcatgttaacatgcgtaggggcatttcaatcatttactttggaaatgagcgaatccatttgg 38386190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 23562298 - 23562362
Alignment:
Q  62 gatacattacttgttctttgatacttgatgagcgtagaaacttttttcctaacgatttgcaatga 126  Q
    ||||||||||||| | ||| || ||||||||||||||||||||  || ||||||||||| |||||    
T  23562298 gatacattacttgatttttaatgcttgatgagcgtagaaacttgctttctaacgatttgaaatga 23562362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 306
Target Start/End: Complemental strand, 5060893 - 5060864
Alignment:
Q  277 tttactttgggaatgagcggaaccatttgg 306  Q
    ||||||||||||||||||||||||||||||    
T  5060893 tttactttgggaatgagcggaaccatttgg 5060864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 244 - 304
Target Start/End: Original strand, 20379668 - 20379728
Alignment:
Q  244 tgcatgttaacttacgtaggggtatttcgatcatttactttgggaatgagcggaaccattt 304  Q
    ||||| |||| || |||||||| |||| |  | ||||||||||||||||||||||||||||    
T  20379668 tgcatattaagttgcgtaggggcattttggacttttactttgggaatgagcggaaccattt 20379728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 8789 - 8681
Alignment:
Q  85 cttgatgagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagg 184  Q
    ||||||||||||||||||||  ||||| ||||||||||| ||||||| |||| ||||||  ||||||| ||| |||||||  |||||||| |||||||||    
T  8789 cttgatgagcgtagaaacttgcttcctgacgatttgcaaagatttgggatgaggattttgacccaaaaattcgcactttttgggtttttgaaggtggagg 8690  T
Q  185 gaaagaaaa 193  Q
    |||| ||||    
T  8689 gaaaaaaaa 8681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 2163 - 2061
Alignment:
Q  91 gagcgtagaaacttttttcctaacgatttgcaatgatttggaatgaagatttttgcccaaaatttcacacttttgaggtttttggaggtggagggaaaga 190  Q
    ||||||||||||||  ||||| |||||||||||||||||   ||||  |||||| |||||||  || |||||||  |||||||  |||||||||||||||    
T  2163 gagcgtagaaacttgcttcctgacgatttgcaatgatttaagatgagcatttttacccaaaaaatcgcactttttgggtttttaaaggtggagggaaaga 2064  T
Q  191 aaa 193  Q
    |||    
T  2063 aaa 2061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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