View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2739_low_6 (Length: 689)

Name: NF2739_low_6
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2739_low_6
NF2739_low_6
[»] chr3 (1 HSPs)
chr3 (15-674)||(44085628-44086287)


Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 15 - 674
Target Start/End: Original strand, 44085628 - 44086287
Alignment:
Q  15 ggtgcgaaaagtaatggtctaaaatttatcaattattctatttttgaatcctgcccagtnnnnnnnccacgacaactggacccactaacgaaaccagttc 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  44085628 ggtgcgaaaagtaatgctctaaaatttatcaattattctatttttgaatcctgcccagtaaaaaaaccacgacaactggacccactaacgaaaccagttc 44085727  T
Q  115 tgttctttcttgtcggagaaagaaacacggtgatgtttcacaccaatgatttcagttccacgatcgagaaattttcgtctctgatttcaaactgtgttac 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44085728 tgttctttcttgtcggagaaagaaacacggtgatgtttcacaccaatgatttcagttccacgatcgagaaattttcgtctctgatttcaaactgtgtttc 44085827  T
Q  215 ggcgaaaagtttgaagcatggaaaagcattgcactctcaactcatcaaaaccgcgcttttctttgaaacttttctcgcaaatggactcattgatttatat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44085828 ggcgaaaagtttgaagcatggaaaagcattgcactctcaactcatcaaaaccgcgcttttctttgaaacttttctcgcaaacggactcattgatttatat 44085927  T
Q  315 tccaaatgtggctgtaaaaagagtattcacaaagcctttgatgatcttcccaacaagacaacacgtacgtggaacacgctgctctcattttactcnnnnn 414  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  44085928 tccaaatgtggctgtaaagagagtattcacaaagcctttgatgatcttcccaacaagacaacacgtacgtggaacacgctgctctcattttactcaaaaa 44086027  T
Q  415 nnggagttttcgatcaagcttataaactgttcgatgaaatgccgcaaagaaaccttgttagttataactcacttatatcaggtttaacacgtcacgagtt 514  Q
      ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44086028 aaggagttttcaatcaagcttataaactgttcgatgaaatgccgcaaagaaaccttgttagttataactcacttatatcaggtttaacacgtcacgagtt 44086127  T
Q  515 tcataaagaagctgttaaattttttagggagatgcaaaatggtgttggtgttttgatgttagacgagttcacgcttgttagcatagtgagtaactgttct 614  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44086128 tcataaagaagctgttaaattttttagggagatgcaaaatggtgttggtggtttgatgttagacgagttcacgcttgttagcctagtgagtaactgttct 44086227  T
Q  615 tgtttgggtactgttaaatggttgcgtcaggttcatggggtggcaactatagttggattt 674  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44086228 tgtttggatactgttaaatggttgcgtcaggttcatggggtggcaactatagttggattt 44086287  T

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