View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2739_low_7 (Length: 665)
Name: NF2739_low_7
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 10 - 650
Target Start/End: Complemental strand, 25965935 - 25965295
Alignment:
| Q |
10 |
aagaaaataacccttagtattggtgatggagccaatgatgtaagcatgattcaagctgctcatgttggtgttggcataagtggaatggagggaatgcaag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25965935 |
aagaaaataacccttagtattggtgatggagccaatgatgtaagcatgattcaagctgctcatgttggtgttggcataagtggaatggagggaatgcaag |
25965836 |
T |
|
| Q |
110 |
ctgtgatggctagtgattttgccattgcacaattccgttaccttgaagatttgcttcttgttcacggccgctggtcatatttgcgaatatgcaaggtgac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25965835 |
ctgtgatggctagtgattttgccattgcacaattccgttaccttgaagatttgcttcttgttcacggccgctggtcatatttgcgaatatgcaaggtgac |
25965736 |
T |
|
| Q |
210 |
gtgtttttataaactagttaagattgtgtggacttgcactgcattttatttattatacacttgaaaagatgttgttcacttattgcaggtggtgatatac |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25965735 |
gtgtttttataaactagttaagattgtgtggacttgcacagcattttatttattatacacttgaaaagatgttgttcacttattgcaggtggtgatatac |
25965636 |
T |
|
| Q |
310 |
ttcttttacaagaatctcacatttactcttactcagttttggtttacttttcaaactgggttttctggtcaaaggttctatgatgattggtttcagtctt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25965635 |
ttcttttacaagaatctcacatttactcttactcagttttggtttacttttcaaactgggttttctggtcaaaggttctatgatgattggtttcagtctt |
25965536 |
T |
|
| Q |
410 |
tatataatgttattttcacggcattgcctgtgatcatggttggattatttgacaaggtagcatattctctccaacaatttctgatttcagattgccttgt |
509 |
Q |
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| T |
25965535 |
tatataatgttattttcacggcattgcctgtgatcatggttggattatttgacaaggtagcatattctctccaacaatttctgatttcagattgccttgt |
25965436 |
T |
|
| Q |
510 |
gcttcactttttacaatacactttcttcatggatgatatcttttgattcgttacttgtgcctttaccaggatgttagtgcatctctatccaagaagtatc |
609 |
Q |
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| T |
25965435 |
gcttcactttttacaatacactttcttcatggatgatatcttttgattcgttacttgtgcctttaccaggatgttagtgcatctctatccaagaagtatc |
25965336 |
T |
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| Q |
610 |
ctgaattatacatggaaggaataagaaatgtcttcttcaaa |
650 |
Q |
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| T |
25965335 |
ctgaattatacatggaaggaataagaaatgtcttcttcaaa |
25965295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 16237815 - 16237620
Alignment:
| Q |
12 |
gaaaataacccttagtattggtgatggagccaatgatgtaagcatgattcaagctgctcatgttggtgttggcataagtggaatggagggaatgcaagct |
111 |
Q |
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||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||| |
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| T |
16237815 |
gaaaataacacttggtattggtgatggtgccaatgatgttagcatgattcaagctgctcatgttggtgttggaataagcgggatggagggtatgcaagca |
16237716 |
T |
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| Q |
112 |
gtgatggctagtgattttgccattgcacaattccgttaccttgaagatttgcttcttgttcacggccgctggtcatatttgcgaatatgcaaggtg |
207 |
Q |
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|| ||||||||||||||||| |||||||| || |||||||||| |||||| ||||||||||| ||||| ||||||||| | ||||||||| ||||| |
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| T |
16237715 |
gtaatggctagtgattttgcaattgcacagtttcgttaccttgcagatttacttcttgttcatggccggtggtcatatcttcgaatatgccaggtg |
16237620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 289 - 480
Target Start/End: Complemental strand, 16237549 - 16237358
Alignment:
| Q |
289 |
ttattgcaggtggtgatatacttcttttacaagaatctcacatttactcttactcagttttggtttacttttcaaactgggttttctggtcaaaggttct |
388 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||| || || || |||| |
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| T |
16237549 |
ttattgcaggtggtgatgtacttcttttacaagaatctcactttcactcttactcagttttggtttaacttgcaaactgggttttccggccagagattct |
16237450 |
T |
|
| Q |
389 |
atgatgattggtttcagtctttatataatgttattttcacggcattgcctgtgatcatggttggattatttgacaaggtagcatattctctc |
480 |
Q |
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||||||||||||||||||| || ||||| ||||| ||||| || | |||||| |||||||||| ||| |||||||||| || |||||||| |
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| T |
16237449 |
atgatgattggtttcagtcattgtataacgttatcttcactgcgcttcctgtggtcatggttggcctatatgacaaggtatcacattctctc |
16237358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 576 - 643
Target Start/End: Complemental strand, 16237263 - 16237196
Alignment:
| Q |
576 |
caggatgttagtgcatctctatccaagaagtatcctgaattatacatggaaggaataagaaatgtctt |
643 |
Q |
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|||||||||||||||||| |||||| ||||||||||||| |||||||||| ||||||||| ||||||| |
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| T |
16237263 |
caggatgttagtgcatctatatccatgaagtatcctgaactatacatggatggaataagagatgtctt |
16237196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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