View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2739_low_8 (Length: 568)
Name: NF2739_low_8
Description: NF2739
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2739_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 19 - 558
Target Start/End: Original strand, 26734850 - 26735389
Alignment:
| Q |
19 |
ttctgtacagataatagagcttggaaataaccgttttaacggccaactaccaacggagatttctggcaattctctcgggaatctcgctctttctaacaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26734850 |
ttctgtacagataatagagcttggaaataaccgttttaacggccaactaccaacggagatttctggcaattctctcgggaatctcgctctttctaacaat |
26734949 |
T |
|
| Q |
119 |
ttatttaccgggaggattccggcgtccatgaagaatctccgatcactgcagacgctgttactcgatgccaatcagtttctcggagaaattccggcagagg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26734950 |
ttatttaccgggaggattccggcgtccatgaagaatctccgatcactgcagacgctgttactcgatgccaatcagtttctcggagaaattccggcagagg |
26735049 |
T |
|
| Q |
219 |
tctttgctttaccggtgttgactagaatcaatataagtggcaataatctcaccggtggaattccaaagacggttactcaatgtagttcactgactgcagt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26735050 |
tctttgctttaccggtgttgactagaatcaacataagtggcaataatctcactggtggaattccaaagacggttactcaatgtagttcactgactgcagt |
26735149 |
T |
|
| Q |
319 |
tgacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataataacatatctggg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26735150 |
tgacttcagccgaaacatgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataatagcatatctggg |
26735249 |
T |
|
| Q |
419 |
aaaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttgg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26735250 |
aaaatccctgatgagattagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttgg |
26735349 |
T |
|
| Q |
519 |
tcttcaacgaccggtcatttgccggaaatcctagcctatg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26735350 |
tcttcaacgaccggtcatttgccggaaatcctagcctatg |
26735389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 35 - 558
Target Start/End: Original strand, 26726552 - 26727075
Alignment:
| Q |
35 |
gagcttggaaataaccgttttaacggccaactaccaacggagatttctggcaattctctcgggaatctcgctctttctaacaatttatttaccgggagga |
134 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26726552 |
gagcttagaaataaccgttttaacggccaactaccatcggagatttccggcaattctctcgggattctcgctctttctaacaatttatttaccgggagga |
26726651 |
T |
|
| Q |
135 |
ttccggcgtccatgaagaatctccgatcactgcagacgctgttactcgatgccaatcagtttctcggagaaattccggcagaggtctttgctttaccggt |
234 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26726652 |
tttcggcgtccatgaagaatctccgatcactgcagactctgttactcgacgccaatcagtttgtcggagaaattccgacagaggtctttgctttaccggt |
26726751 |
T |
|
| Q |
235 |
gttgactagaatcaatataagtggcaataatctcaccggtggaattccaaagacggttactcaatgtagttcactgactgcagttgacttcagccgaaac |
334 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || |||| || ||||||||||||| |||| |
|
|
| T |
26726752 |
gttgactagaattaacataagtggcaacaatctcactggtggaattccaaagacggttactcaatgtagtacattgacagccgttgacttcagcctaaac |
26726851 |
T |
|
| Q |
335 |
atgcttaccggtgaggttcctaaagggatgaagaatctgaaggttctaagcatttttaatgtttcgcataataacatatctgggaaaatccctgatgaga |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| |||||| ||| ||||||| |||| | |
|
|
| T |
26726852 |
atgcttaccggtgaggttcctaaagggatgaagaatctgaaggtgctaaacattttgaatgtttcgcataatagcatatcggggcaaatccccaatgata |
26726951 |
T |
|
| Q |
435 |
ttagattcatgacgagtctaacgacgctggatttatcttacaacaattttaccggaattgtccccacaggtggtcagtttttggtcttcaacgaccggtc |
534 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
26726952 |
ttagattcatgatgagtctaacgacgctggatttatcttacaacaatttcaccggaattgtccccaccggtggtcagtttttggtcttcaacgaccgttc |
26727051 |
T |
|
| Q |
535 |
atttgccggaaatcctagcctatg |
558 |
Q |
| |
|
|||||| ||||| |||||| |||| |
|
|
| T |
26727052 |
atttgcgggaaaccctagcttatg |
26727075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University