View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2740_high_12 (Length: 254)
Name: NF2740_high_12
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_high_12 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 254
Target Start/End: Original strand, 9938267 - 9938500
Alignment:
| Q |
21 |
actgaatcagatatagacctcataggtt-cgatatctgctggagcgagtgttgtgttatgtaaaagtgtattctcattattgaatcatggtttgatacaa |
119 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9938267 |
actgaatcagatatggacctcataggtttcgatatctgctggagcgagtgttgtgttatgtaaaagtgtattctcattattgaattatggtttgatacaa |
9938366 |
T |
|
| Q |
120 |
aggtcctatatatagcaaactgagatacacaacaaactgagttacttgagagctaagtaacttccacaactaacttctaactaacttgtaacaagcatat |
219 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9938367 |
agctcctatatatagcaaactgag-tacacaacaaactgagttacttgagagctaagtaacttccacaactaacttctaactaacttgtaacaagcatat |
9938465 |
T |
|
| Q |
220 |
cctaacaatcactctcctaaactgaaccttatgac |
254 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9938466 |
cctaacaattactctcctaaactgaaccttatgac |
9938500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 30288366 - 30288244
Alignment:
| Q |
73 |
tgttatgtaaaagtgtattctcattattgaatcatggtttgatacaaaggtcctatatatagcaaactgagatacacaacaaa-ctgagttacttgagag |
171 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
30288366 |
tgttaggtaaaaatttattctcattattgaat-atggtttggtacaagactgctatatatagcaaactgagatacactacaaaactgagttacttgcaag |
30288268 |
T |
|
| Q |
172 |
ctaagtaacttccacaactaactt |
195 |
Q |
| |
|
|||||||||||| | ||||||||| |
|
|
| T |
30288267 |
ctaagtaacttctaaaactaactt |
30288244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University