View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2740_high_16 (Length: 245)
Name: NF2740_high_16
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 37511718 - 37511903
Alignment:
| Q |
1 |
ctgcgcaaggtgaccacagagagcatcaatgatcgcgttggcggcggcgaactcgccgtgaaaccaagcaagcattgcatctttggcgtaggaatcaaca |
100 |
Q |
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| T |
37511718 |
ctgcgcaaggtgaccacagagagcatcaatgatcgcgttggcggcggcgaactcgccgtgaaaccaagcaagcattgcatctttggcgtaggaatcaaca |
37511817 |
T |
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| Q |
101 |
aaaggcggcgctggttgaaacggtgccgttttgggttgatccttccgtgattcctggatagccgccatggttagtattgagttcac |
186 |
Q |
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| T |
37511818 |
aaaggcggcgctggttgaaacggtgccgttttgggttgatccttccgtgattcctggatagccgccatggttagtattgagttcac |
37511903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 40225067 - 40225144
Alignment:
| Q |
16 |
acagagagcatcaatgatcgcgttggcggcggcgaactcgccgtgaaaccaagcaagcattgcatctttggcgtagga |
93 |
Q |
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| T |
40225067 |
acagagagcgtcgatgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggatagcgtctttggcgtagga |
40225144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 51588124 - 51588081
Alignment:
| Q |
35 |
gcgttggcggcggcgaactcgccgtgaaaccaagcaagcattgc |
78 |
Q |
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| T |
51588124 |
gcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgc |
51588081 |
T |
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