View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2740_high_2 (Length: 487)
Name: NF2740_high_2
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_high_2 |
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| [»] scaffold1636 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 9938972 - 9938500
Alignment:
| Q |
1 |
aaagaaatatgttcgagctgcaaatttgtttgtaataca-agttcaaaaatatcctcccctcaattacattttccgaataaagattacatgggaatagac |
99 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9938972 |
aaagaaatatgtttgagctgcaaatttgtttgtaatacgcagtccaaaaatatcctcccctcaattacatttttcgaataaagattacatgggaatagac |
9938873 |
T |
|
| Q |
100 |
tggttagaggacaactcaatggtcgaccaagaaagttacatacatcattttcagcacgcctataagcaactaagacatccagactcaactttgttaccat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9938872 |
cagttagaggacaactcaatggtcgaccaagaaagttacatacatcattttcagcacgcctataagcaactaaggcatccagactcaactttgttaccat |
9938773 |
T |
|
| Q |
200 |
attgagtgcacagttatactatgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagatacc |
299 |
Q |
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| T |
9938772 |
attgagtgcacagttatactatgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagatacc |
9938673 |
T |
|
| Q |
300 |
actttctcagagatcttacaaaagaaggagtggttgagagtactcaagaacagattgcagatattatgacttggcctttgaagctggaaaccttttgcaa |
399 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
9938672 |
actttctcagagatcttacagaagaaggagtgg-tgagagtactcaggaacagattgcagatattatgacttggcttttgaagctggaaaccttttgcaa |
9938574 |
T |
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| Q |
400 |
attgagggagaaactaggcatctgtgaaatgtcttaattctttgtgatatatgtttgtaaactaaatttatttg |
473 |
Q |
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| T |
9938573 |
attgagggagaaactaggcatctgtgaaatgtcttaattctttgtgatatatgtctgtaaactaaatttgtttg |
9938500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 40609935 - 40609865
Alignment:
| Q |
221 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgt |
291 |
Q |
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| T |
40609935 |
tgtgataatagctcatcaataaagctatctaagaatccagtcatgcatggtagatgcaaacatatagatgt |
40609865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 17536385 - 17536300
Alignment:
| Q |
221 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttct |
306 |
Q |
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|||||||||||||| |||||||||| || || |||||||| | ||||||||| | ||||| ||||||||| |||| || ||||| |
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| T |
17536385 |
tgtgataatagttcaactatcaaactctccaagaacccagttttacatgggagaagtaaacacatagatgtgcgatatcattttct |
17536300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 221 - 338
Target Start/End: Complemental strand, 30967216 - 30967099
Alignment:
| Q |
221 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttctcagagatcttacaa |
320 |
Q |
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|||||||||||||| ||||| |||||| | ||||| || || ||||||||| || |||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
30967216 |
tgtgataatagttcatctattaaactgcccaaaaatcctgtattgcatgggaagtgtaaacatatagatgttagataccactttctcagggatcttacaa |
30967117 |
T |
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| Q |
321 |
aagaaggagtggttgaga |
338 |
Q |
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| T |
30967116 |
aataaggaatagttgaga |
30967099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 14178835 - 14178910
Alignment:
| Q |
221 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagat |
296 |
Q |
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| T |
14178835 |
tgtgataatagttcctctataaagttgtctacgaaccctgtgatgcatgtaagatgcaagcacatagatgtgagat |
14178910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 221 - 324
Target Start/End: Original strand, 42971834 - 42971937
Alignment:
| Q |
221 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttctcagagatcttacaa |
320 |
Q |
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|||||||||||||| || || || ||||| ||||| || | |||||||||||||||||||| || ||||| |||||||| ||||| || || ||||| | |
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| T |
42971834 |
tgtgataatagttcttccattaagctgtcaaaaaatcctatcatgcatgggagatgcaaacacattgatgttagataccattttctaagggaccttacta |
42971933 |
T |
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| Q |
321 |
aaga |
324 |
Q |
| |
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|||| |
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| T |
42971934 |
aaga |
42971937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 47144730 - 47144776
Alignment:
| Q |
248 |
tctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgag |
294 |
Q |
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| T |
47144730 |
tctaagaatccagttatgcatgggagatgcaagcatatagatgtgag |
47144776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1636 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1636
Description:
Target: scaffold1636; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 610 - 671
Alignment:
| Q |
264 |
tgcatgggagatgcaaacatatagatgtgagataccac-tttctcagagatcttacaaaaga |
324 |
Q |
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||||||| ||||||||||||||||||||||| || ||| ||| | || |||||||||||||| |
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| T |
610 |
tgcatggaagatgcaaacatatagatgtgaggtatcacttttttgagggatcttacaaaaga |
671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 45825319 - 45825234
Alignment:
| Q |
221 |
tgtgataatagttcctctatcaaactgtctaaaaacccagtgatgcatgggagatgcaaacatatagatgtgagataccactttct |
306 |
Q |
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|||||||||||||| |||||||||| || || |||||||| | ||||||||| | ||||| ||||||||| |||| || ||||| |
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| T |
45825319 |
tgtgataatagttcaactatcaaactctccaagaacccagttttacatgggagaagtaaacacatagatgtgcgatatcattttct |
45825234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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