View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2740_high_21 (Length: 237)
Name: NF2740_high_21
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 39475278 - 39475357
Alignment:
| Q |
143 |
gtctcattcttaaagtttgctttagacctcaatatttcttgagacaaaccttctgcaaatattccctaaaccataaaatt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475278 |
gtctcattcttaaagtttgctttagacctcaatatttcttgagacaaaccttctgcaaatattccctaaaccataaaatt |
39475357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39475120 - 39475195
Alignment:
| Q |
1 |
agggggtcaacctgtttgaggtaaggattgtatcaaacatctattgattaatgacatcaattaagattgtttcgtt |
76 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39475120 |
agggggtcaacctgtttgaggtcagggttgtatcaaacatctattgattaatgacatcaattaagattgtttcgtt |
39475195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University