View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2740_high_6 (Length: 331)
Name: NF2740_high_6
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_high_6 |
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| [»] scaffold1432 (1 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: scaffold1432 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 1645 - 1336
Alignment:
| Q |
22 |
cattgttggtgattttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagtgacttggtttagta |
121 |
Q |
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| T |
1645 |
catttttggtgaatttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagtgacttggtttagta |
1546 |
T |
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| Q |
122 |
gtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcttggccttacaagtaaaatttctaacaataaaaataaccgaaccc |
221 |
Q |
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| T |
1545 |
gtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcttggccttacaagtaaaatttcaaacaataaaaataaccgaaccc |
1446 |
T |
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| Q |
222 |
tatcctttctcaatctctgctcttccattctcttcgaaatctagtgtacgttggcggcgtttcaagttgccattccatgtatacgacacttctctatgca |
321 |
Q |
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| T |
1445 |
tatcctctctcaatctctgctcttccattctctttgacatctagtgtacgttggcgccttttcaagttgccattccatgtatacgacacttctctatgcg |
1346 |
T |
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| Q |
322 |
cgatttcatc |
331 |
Q |
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|||||||||| |
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| T |
1345 |
cgatttcatc |
1336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 21712 - 22025
Alignment:
| Q |
1 |
atccgattccagatctaatgtcattgttggtgattttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatt |
100 |
Q |
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| T |
21712 |
atccgattcaagatctaatgtcattgttggtgattttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatt |
21811 |
T |
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| Q |
101 |
tgaaagtgacttggtttagtagtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcttggccttacaagtaaaatttcta |
200 |
Q |
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| T |
21812 |
tgaaagtgatttggtttact-----agtattttgagtaattggattatagcggctttagctaaattcaccatcctcttggccttacaagtaaaatttcaa |
21906 |
T |
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| Q |
201 |
acaataaaaataaccgaaccctatcctttctcaatctctgctcttccattctcttcgaaatctagtgtacgttggcggcgtttcaagttgccattccatg |
300 |
Q |
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|||||||||||||| |||||||| ||||||||||||||| ||||||||| ||| ||| |||||||||||||| | | | |||||||||||||||||||| |
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| T |
21907 |
acaataaaaataactgaaccctagtctttctcaatctctgatcttccattttctacgacatctagtgtacgttagtgccttttcaagttgccattccatg |
22006 |
T |
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| Q |
301 |
tatacgacacttctctatg |
319 |
Q |
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| T |
22007 |
tgcacgacacttctctatg |
22025 |
T |
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