View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2740_low_1 (Length: 627)
Name: NF2740_low_1
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Complemental strand, 2489157 - 2488539
Alignment:
| Q |
1 |
attcacaactaaatacaataacgacaagcactgcaaacctcagatgttactgcttgagcttctaacttcaatgaatctctgtcactgaattttcccgcct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2489157 |
attcacaactaaatacaataacgacaagcactgcaaacctcagatgttactgcttgagcttctaacttcaatgaatctctgtcaccgaattttcccgcct |
2489058 |
T |
|
| Q |
101 |
ggaatattcccagagcatgggacaaactgtttcgaaatacaattaagtaagtatataaaagttagattgttcatgcagcaaaatttgccggtctaacctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489057 |
ggaatattcccagagcatgggacaaactgtttcgaaatacaattaagtaagtatataaaagttagattgttcatgcagcaaaatttgccggtctaacctg |
2488958 |
T |
|
| Q |
201 |
ttgcatggaatgatcagttttccatttctgtattcaggctctttgttcttcattaaatgatacgaaattgctgacacgataatctcttctatatagttac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488957 |
ttgcatggaatgatcagttttccatttctgtattcaggctctttgttcttcattatatgatacgaaattgctgacacgataatctcttctatatagttac |
2488858 |
T |
|
| Q |
301 |
tgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgttatcttgaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488857 |
tgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgttatcttgaat |
2488758 |
T |
|
| Q |
401 |
ctgtatcttcttcatatcctcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagag |
500 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2488757 |
ctgtatcttcttcatatccgcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagag |
2488658 |
T |
|
| Q |
501 |
gtaagcatctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctgga |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2488657 |
gtaagcatctcatctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctgga |
2488558 |
T |
|
| Q |
601 |
atagtttatatatcctttg |
619 |
Q |
| |
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||||||||||||||||||| |
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|
| T |
2488557 |
atagtttatatatcctttg |
2488539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 213 - 619
Target Start/End: Original strand, 41592228 - 41592634
Alignment:
| Q |
213 |
atcagttttccatttctgtattcaggctctttgttcttcattaaatgatacgaaattgctgacacgataatctcttctatatagttactgagaaccattg |
312 |
Q |
| |
|
||||| || |||||||||||||| | |||||||| ||||| ||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
41592228 |
atcagcttcccatttctgtattcgaggtctttgtttttcatcaaatgatgagagattgctgacacaataatctcttctatatagttactgagaaccattg |
41592327 |
T |
|
| Q |
313 |
tgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggttcttgttatcttgaatctgtatcttctt |
412 |
Q |
| |
|
||||| | |||||||||||||||| ||||| |||||||||||||||||||| | ||||||| | ||||| || || ||||| |||| |||||| |||| |
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|
| T |
41592328 |
tgtcttccacacagatggaatccaagtcatcgcaatcaagatcattggctgcaagcacttccgtaatatgatttttattatcctgaacttgtatcatctt |
41592427 |
T |
|
| Q |
413 |
catatcctcttcaaattgagacttccagctgacaagacgagattcatcttctggtggtttgatttctatgttgtaagggaagagagaggtaagcatctca |
512 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||| | ||||||||||| || ||| |||||||||| | ||| |||||||| ||||| ||||| |
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| T |
41592428 |
catatcctcttccaattgtgacttccagctgacgagatgtgattcatcttccggaggtctgatttctatatcgtacgggaagagcacagtaagtttctca |
41592527 |
T |
|
| Q |
513 |
tctactcttttgcattcattaccagaatccaaaatccgcgaaccaataatcaaaattggtccagatagtttcgttaacattgtctggaatagtttatata |
612 |
Q |
| |
|
|| | | || |||||||||||||||| | || |||||||||| ||||| ||| |||||||| ||| || | |||||| | ||||| | ||||||| |
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|
| T |
41592528 |
tccaattcttcaaattcattaccagaatctagaactcgcgaaccaagaatcagaatcggtccagagagtctcttcaacattttttggaacatgttatata |
41592627 |
T |
|
| Q |
613 |
tcctttg |
619 |
Q |
| |
|
|| |||| |
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|
| T |
41592628 |
tcttttg |
41592634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 286 - 391
Target Start/End: Original strand, 8842865 - 8842970
Alignment:
| Q |
286 |
cttctatatagttactgagaaccattgtgtctgctacacagatggaatccaggtcatgacaatcaagatcattggctgctaacacttccatgatatggtt |
385 |
Q |
| |
|
||||||| ||||||| |||||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||||||| | ||||||||||||||||| |
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|
| T |
8842865 |
cttctatgtagttacaaagaaccattgtgtccgctacacagatggaatcaatgtcatgaatatcaagataattggctgcaaggacttccatgatatggtt |
8842964 |
T |
|
| Q |
386 |
cttgtt |
391 |
Q |
| |
|
|||||| |
|
|
| T |
8842965 |
cttgtt |
8842970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 318 - 359
Target Start/End: Original strand, 32248412 - 32248453
Alignment:
| Q |
318 |
gctacacagatggaatccaggtcatgacaatcaagatcattg |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
32248412 |
gctacacagatggaatccaggtcatgacaatcgagatcattg |
32248453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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