View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2740_low_12 (Length: 254)
Name: NF2740_low_12
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 1293927 - 1293706
Alignment:
| Q |
26 |
gcatgtaacgtacaacaaactattttatcactatataatataaaagacctcatgctatatttataagaaaaacaaacttgaattgcaagaaagccttttt |
125 |
Q |
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| T |
1293927 |
gcatgtaacgtacaacaaactattttatcactatataatataaaagacctcatgctatatttataagaaaaacaaacttgaattgcaagaaagccttttt |
1293828 |
T |
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| Q |
126 |
aaaatcagaatagttattaaatgcctcttaagtattttgacatgttgttttgtccctttaactctctcaattgatcacttaatctaattattaaggatct |
225 |
Q |
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| T |
1293827 |
aaaatcagagtagttattaaatgcctcttaagtattttgacatgttgttttgtccctttaactctctcaattgatcacttaatctaattattaaggatct |
1293728 |
T |
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| Q |
226 |
cacataaaatattcttggacat |
247 |
Q |
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| T |
1293727 |
cacataaaatattgttggacat |
1293706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 1285961 - 1285877
Alignment:
| Q |
105 |
gaattgcaagaaagcctttttaaaatcagaatagttattaaatgcctcttaagtattttgacatgttgttttgtccctttaactc |
189 |
Q |
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||||||||||||| |||||| ||||| ||||| ||||| ||||| | || ||||||||||| ||||||||||||||||||||||| |
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| T |
1285961 |
gaattgcaagaaaaccttttaaaaattagaatcgttatcaaatgtccctcaagtattttgatatgttgttttgtccctttaactc |
1285877 |
T |
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