View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2740_low_14 (Length: 254)
Name: NF2740_low_14
Description: NF2740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2740_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 53037837 - 53037595
Alignment:
| Q |
12 |
tcgaaaaatatcaagtcatcaaaacatatagctgaatagtatttttgatggtannnnnnnnnnccttttcaatatagccccccttccttcctagttccta |
111 |
Q |
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| T |
53037837 |
tcgaagaaaatcaagtcatcaaaacatatagctgaatagtatttttgatagtattttttttttccttttcaatatagccccccttccttcctagttccta |
53037738 |
T |
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| Q |
112 |
tttccaacggtctccacaacaaatacgaaattactctattagcacaaaagggatgagaaaggaaagatggatgcaatgcacacaataaaagactagcaaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037737 |
tttccaacggtctccacaacaaatacgaaattactctattagcacaaaaggaatgagaaaggaaagatggatgcaatgcacacaataaaagactagcaaa |
53037638 |
T |
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| Q |
212 |
cacataatttcctctacaattagacattttatatctctcttag |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53037637 |
cacataatttcctctacaattagacattttatatctcttttag |
53037595 |
T |
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